DY258728

Overview
NameDY258728
Unique NameDY258728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1007
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 3.117e-40
Identity = 99/250 (39.60%), Postives = 142/250 (56.80%), Query Frame = 1
Query:   49 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLLDHMHEFE 771
            AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YNNP RAVEYL +GIP   E       P +G    S                           Q      + AAG   L+FLR+ PQFQ +R ++Q NP LL  +LQ+LG++NPQL++ I  HQ  F++++NEP         V+G  G +G++   +    IQVTP+E+EAIERL+A+GF  ++V++ +FAC +NE LAAN+LL    + E
Sbjct:  153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQES---------------------------QVSEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363          
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.944e-40
Identity = 98/250 (39.20%), Postives = 142/250 (56.80%), Query Frame = 1
Query:   49 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLLDHMHEFE 771
            AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YNNP RAVEYL +GIP   E       P +G    S                             + +  S  AG   L+FLR+ PQFQ +R ++Q NP LL  +LQ+LG++NPQL++ I  HQ  F++++NEP         V+G  G +G++   +    IQVTP+E+EAIERL+A+GF  ++V++ +FAC +NE LAAN+LL    + E
Sbjct:  153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQ----------------------------VSEQPSTEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 362          
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RHP23_SCHPO (UV excision repair protein rhp23 OS=Schizosaccharomyces pombe GN=rhp23 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 9.385e-37
Identity = 96/247 (38.87%), Postives = 135/247 (54.66%), Query Frame = 1
Query:   52 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGL------PDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLLDHMHEFED 774
            A+ L  G     A++ +++MG   ++R  V RA+RAA+NNP+RAVEYL +GIPE            N Q   S              +      P +LF Q         +  S   G   L FLR+ PQFQ LR +VQ NPQ+L+ +LQ++G+ +P L + I ++   FL+L+ E   G EG       G+    IQ+T EE E+I+RL  +GFDR IV++ + AC +NEELAANYL +H HE ED
Sbjct:  138 ANTLAVGAQRNVAVENMVEMG---YERSEVERAMRAAFNNPDRAVEYLLTGIPEDIL---------NRQREESAAALAAQQQQSEALAPTSTGQPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAE---GAEGESALPSGGIQ---IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366          
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RAD23_DICDI (UV excision repair protein RAD23 homolog OS=Dictyostelium discoideum GN=rcbA PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 9.406e-29
Identity = 86/236 (36.44%), Postives = 121/236 (51.27%), Query Frame = 1
Query:   52 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDV-GSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM-GFDRAIVLEVFFACXQNEELAANYLLD 753
            +S+   G  LE  I+ I DMG   + RD V+RALR  +NN ERA+EYL SG               N  AAN                           P+   ++ G G +G    + LRN P F +LR  +  NP ++  +LQ+L + NP LVR IQE+  +F+RL       G+GN G         ++QVT EE EAI+RL+A+ G D++ V+E +FAC +NEEL A+YL +
Sbjct:  154 SSDFATGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVSG---------------NIPAAND--------------------------PEDEEEMEGGGGSGDNPFEALRNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLFQ-----GDGNPGGNPGQF---TLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 337          
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RAD23_YEAST (UV excision repair protein RAD23 OS=Saccharomyces cerevisiae GN=RAD23 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.232e-21
Identity = 86/273 (31.50%), Postives = 126/273 (46.15%), Query Frame = 1
Query:   64 VAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE-----QAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLP--DVGSGAAGA--GSLDFLRNSPQFQV---------LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--------QGGEGNL--------GDQLAGLMPQS-------IQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLL-DH 756
            V G      I++I++MG   + R+ V RALRAA+NNP+RAVEYL  GIPE     + + Q  A A     AA +                       DLF Q     +  SGA G   G+ D  +  P   +         LR +V  NP+ L P+L+ +  + PQL   I  +   F+ ++ E V        +G +  +        G+  A  + Q        +  TPE+ +AI RL  +GF+R +V++V+FAC +NEE AAN L  DH
Sbjct:  143 VVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQQTAAAAEQPSTAATTAEQPAED----------------DLFAQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 396          
The following BLAST results are available for this feature:
BLAST of DY258728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RD23A_HUMAN3.117e-4039.60UV excision repair protein RAD23 homolog A OS=Homo... [more]
RD23A_BOVIN6.944e-4039.20UV excision repair protein RAD23 homolog A OS=Bos ... [more]
RHP23_SCHPO9.385e-3738.87UV excision repair protein rhp23 OS=Schizosaccharo... [more]
RAD23_DICDI9.406e-2936.44UV excision repair protein RAD23 homolog OS=Dictyo... [more]
RAD23_YEAST4.232e-2131.50UV excision repair protein RAD23 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AH07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258728 ID=DY258728; Name=DY258728; organism=Citrus clementina; type=EST; length=1007bp
TCTGTGTCATCAGTTTCTGCTACGTCAGAGTCTGGTGTGTATGGGCATGC
TGCATCTAATCTGGTTGCTGGGAACAACTTGGAGGGAGCAATCCAGCAGA
TTCTTGATATGGGTGGAGGGACTTGGGATAGAGATACTGTTGTTCGTGCT
CTTCGAGCTGCTTATAATAATCCTGAGAGGGCTGTTGAATATTTATATTC
TGGTATACCTGAGCAAGCTGAAGTTCAACCTGTGGCCCGCGCCCCTGGTA
ATGGACAAGCTGCTAACTCTCCAACTCAGATGCCACAGCCAACCCAACCG
GCACCCGTTACTTCTAGTGGGCCAAATGCAAATCCTTTGGACCTCTTTCC
TCAGGGCCTTCCTGACGTGGGTTCAGGTGCAGCTGGCGCTGGCAGTCTTG
ACTTTTTACGTAATAGTCCACAGTTTCAAGTTTTGCGAGCTATGGTGCAG
GCAAATCCTCAATTATTGCAGCCCATGCTTCAAGAGTTGGGGAAACAAAA
TCCTCAGCTAGTGAGGCTTATTCAGGAACATCAGGCTGACTTCCTTCGGC
TTATCAATGAACCTGTTCAAGGTGGTGAGGGGAATTTGGGGGACCAGCTT
GCTGGGTTAATGCCACAGTCAATACAAGTCACGCCCGAAGAACGTGAAGC
CATAGAACGTCTTGAGGCAATGGGCTTTGATCGAGCAATTGTATTGGAGG
TGTTCTTTGCCTGCAANCAGAATGAGGAACTTGCTGCCAACTACCTTTTA
GACCATATGCATGAGTTTGAGGATTGATTGAAAGGGGAATAGAAAAGATT
CAAGATGAAAATGATGGTTACTACCTTTGGACGGCATTTATTAAAAAATA
CCTCTAATTAATTTCTTTCCCCTCTCATTTTCCCTCAACTTCATTTGTTA
AACAAAGTTCAAATATTCTTGCCTTGGGTATGGGTGGAAAATGGAACAAG
TAAGGCAAGATGTAACATTCCTTCACTTTCTCATTTTAGAAACCTAAGGG
TTCAGGG
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