DY258728
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 3.117e-40 Identity = 99/250 (39.60%), Postives = 142/250 (56.80%), Query Frame = 1 Query: 49 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLLDHMHEFE 771 AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +GIP E P +G S Q + AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+EAIERL+A+GF ++V++ +FAC +NE LAAN+LL + E Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQES---------------------------QVSEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 6.944e-40 Identity = 98/250 (39.20%), Postives = 142/250 (56.80%), Query Frame = 1 Query: 49 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLLDHMHEFE 771 AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +GIP E P +G S + + S AG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+EAIERL+A+GF ++V++ +FAC +NE LAAN+LL + E Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQ----------------------------VSEQPSTEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 362
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RHP23_SCHPO (UV excision repair protein rhp23 OS=Schizosaccharomyces pombe GN=rhp23 PE=1 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 9.385e-37 Identity = 96/247 (38.87%), Postives = 135/247 (54.66%), Query Frame = 1 Query: 52 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGL------PDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLLDHMHEFED 774 A+ L G A++ +++MG ++R V RA+RAA+NNP+RAVEYL +GIPE N Q S + P +LF Q + S G L FLR+ PQFQ LR +VQ NPQ+L+ +LQ++G+ +P L + I ++ FL+L+ E G EG G+ IQ+T EE E+I+RL +GFDR IV++ + AC +NEELAANYL +H HE ED Sbjct: 138 ANTLAVGAQRNVAVENMVEMG---YERSEVERAMRAAFNNPDRAVEYLLTGIPEDIL---------NRQREESAAALAAQQQQSEALAPTSTGQPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAE---GAEGESALPSGGIQ---IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RAD23_DICDI (UV excision repair protein RAD23 homolog OS=Dictyostelium discoideum GN=rcbA PE=1 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 9.406e-29 Identity = 86/236 (36.44%), Postives = 121/236 (51.27%), Query Frame = 1 Query: 52 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDV-GSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM-GFDRAIVLEVFFACXQNEELAANYLLD 753 +S+ G LE I+ I DMG + RD V+RALR +NN ERA+EYL SG N AAN P+ ++ G G +G + LRN P F +LR + NP ++ +LQ+L + NP LVR IQE+ +F+RL G+GN G ++QVT EE EAI+RL+A+ G D++ V+E +FAC +NEEL A+YL + Sbjct: 154 SSDFATGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVSG---------------NIPAAND--------------------------PEDEEEMEGGGGSGDNPFEALRNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLFQ-----GDGNPGGNPGQF---TLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 337
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RAD23_YEAST (UV excision repair protein RAD23 OS=Saccharomyces cerevisiae GN=RAD23 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 4.232e-21 Identity = 86/273 (31.50%), Postives = 126/273 (46.15%), Query Frame = 1 Query: 64 VAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE-----QAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLP--DVGSGAAGA--GSLDFLRNSPQFQV---------LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--------QGGEGNL--------GDQLAGLMPQS-------IQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLL-DH 756 V G I++I++MG + R+ V RALRAA+NNP+RAVEYL GIPE + + Q A A AA + DLF Q + SGA G G+ D + P + LR +V NP+ L P+L+ + + PQL I + F+ ++ E V +G + + G+ A + Q + TPE+ +AI RL +GF+R +V++V+FAC +NEE AAN L DH Sbjct: 143 VVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQQTAAAAEQPSTAATTAEQPAED----------------DLFAQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 396 The following BLAST results are available for this feature:
BLAST of DY258728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258728 ID=DY258728; Name=DY258728; organism=Citrus clementina; type=EST; length=1007bpback to top |