DY258736

Overview
NameDY258736
Unique NameDY258736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length909
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258736 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 6.254e-98
Identity = 173/232 (74.57%), Postives = 197/232 (84.91%), Query Frame = 3
Query:   93 RKTGSKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 776
            +KT +K+    SSG  +YGP+R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+LMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLA FSMFGFFV AIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of DY258736 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.393e-97
Identity = 173/221 (78.28%), Postives = 189/221 (85.52%), Query Frame = 3
Query:  117 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 776
            S+G  WYGPDR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A QVVLMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLAMFS FGFFV AIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
BLAST of DY258736 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.628e-96
Identity = 186/251 (74.10%), Postives = 199/251 (79.28%), Query Frame = 3
Query:   27 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 779
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+LMGAVEGYRIA GPLGEVTDPLYP GSFD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFV AIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of DY258736 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 4.482e-96
Identity = 181/262 (69.08%), Postives = 203/262 (77.48%), Query Frame = 3
Query:    3 TMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 779
            T+  ++ F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:   12 TVVKATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of DY258736 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 4.956e-95
Identity = 181/261 (69.35%), Postives = 201/261 (77.01%), Query Frame = 3
Query:    9 ALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSP-WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 779
            A S + V K   L+  G   S      +    +  ++ G+  WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+LMG VEG+RI G   +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:    8 AASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of DY258736 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 323.939 bits (829), Expect = 7.663e-88
Identity = 159/201 (79.10%), Postives = 173/201 (86.07%), Query Frame = 3
Query:   18 SSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 605
            S+F G+ + L P  NEL      NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVLMGAVEGYR+ GGPLGE  D LYPGG+FDPLGLA+DPEAF
Sbjct:    9 SAFAGQTL-LKPQ-NELVRKVGGNGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of DY258736 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.887e-86
Identity = 159/220 (72.27%), Postives = 180/220 (81.82%), Query Frame = 3
Query:  132 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 779
            +YGPDR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVLMG  E YR  GG  G  +  D LYPGG FDPLGLADDP+ FAELKVKEIKNGRLAMFS  GFFV AIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of DY258736 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 1.036e-84
Identity = 159/229 (69.43%), Postives = 180/229 (78.60%), Query Frame = 3
Query:   96 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 776
            K  SKS SS + +YGPD          + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+A +WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVLMG VEGYR+ GGP GE  DPLYPG +FDPLGLADDP+ FAELKVKEIKNGRLAMF+  GFFV AIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of DY258736 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.269e-74
Identity = 134/150 (89.33%), Postives = 140/150 (93.33%), Query Frame = 3
Query:  333 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 782
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+ GGPLGE  DPLYPG +FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFV AIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of DY258736 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.034e-60
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 3
Query:  435 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 782
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116          
The following BLAST results are available for this feature:
BLAST of DY258736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB2_CHLRE6.254e-9874.57Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO1.393e-9778.28Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO2.628e-9674.10Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB23_SOLLC4.482e-9669.08Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU4.956e-9569.35Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_SILPR7.663e-8879.10Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_DUNTE1.887e-8672.27Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA1.036e-8469.43Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY1.269e-7489.33Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB2D_SOLLC3.034e-6095.69Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BA05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258736 ID=DY258736; Name=DY258736; organism=Citrus clementina; type=EST; length=909bp
CAACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTCGCC
CCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAAC
CGGGAGCAAGTCTGTTTCTTCAGGCAGCCCGTGGTACGGCCCGGACAGAG
TCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGT
GAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACCC
AGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGG
CCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAAC
GGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGAGCTCAGATCTT
CAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAAGCTTGATCCACGCCC
AGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCTGTT
GAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACCGACCCATT
GTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGG
CTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATG
TTCTCCATGTTTGGTTTCTTTGTTCANGCCATTGTCACCGGCAAGGGACC
GTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCT
GGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAA
AAGTTTTTCTCTTTTCGGGTTCTTGGATATCATGGAAATCTGGTGGGAGC
CCCTGGAAAGCTTTAATTTGAGGTGGGGATTATTTAAAAAATGGCTTCAT
TTTGATTTT
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