DY258754

Overview
NameDY258754
Unique NameDY258754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1246
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258754_ssr149 microsatellite DY258754_ssr149:149..168. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258754_ssr174 microsatellite DY258754_ssr174:174..205. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258754_ssr217 microsatellite DY258754_ssr217:217..228. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10162 contig Ccv1_Contig10162:2..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.535e-13
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 3
Query:  222 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 392
            + +AARTT DR+ ACNCLK AA  I  LN  NA  +P  CGVS+PY IS STDCS+V
Sbjct:   61 LNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.324e-13
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  222 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 392
            + +AA TT DR+TACNCLK  AGSI  LN  NA  +P  CGVSIPY IS S DCS V
Sbjct:   61 LNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.324e-13
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  222 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 392
            + +AA TT DR+TACNCLK  AGSI  LN  NA  +P  CGVSIPY IS S DCS V
Sbjct:   60 LNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.324e-13
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  222 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 392
            + +AA TT DR+TACNCLK  AGSI  LN  NA  +P  CGVSIPY IS S DCS V
Sbjct:   61 LNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.634e-13
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  231 AARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 392
            AARTT D++TAC CLKQ A ++  LN N A GLP  CGV+IPYKIS +TDC++V
Sbjct:   66 AARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.634e-13
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  234 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            ARTTPDRQ AC CL  AA ++P +N   A GLP+ACGV+IPYKIS +T+C+ V+
Sbjct:   65 ARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.634e-13
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  234 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            ARTTPDRQ AC CL  AA ++P +N   A GLP+ACGV+IPYKIS +T+C+ V+
Sbjct:   64 ARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.634e-13
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 3
Query:  228 AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 392
            AAA TT DR+TACNCLK AA  I  LN  NA  +P  CGVS+PY IS S DCS+V
Sbjct:   61 AAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.634e-13
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 3
Query:  228 AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 392
            AAA TT DR+TACNCLK AA  I  LN  NA  +P  CGVS+PY IS S DCS+V
Sbjct:   61 AAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.643e-12
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 3
Query:  222 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 392
            + AAA TTPDR+TACNCLK AA +I  +N   A GLP  CGV IPY IS ST+C+ V
Sbjct:   60 LNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
The following BLAST results are available for this feature:
BLAST of DY258754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
NLTP1_SORBI2.535e-1361.40Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP2_ORYSI4.324e-1363.16Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2B_ORYSJ4.324e-1363.16Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ4.324e-1363.16Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP_DAUCA9.634e-1362.96Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTPD_BRAOT9.634e-1361.11Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP3_BRANA9.634e-1361.11Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP1_ORYSJ9.634e-1363.64Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI9.634e-1363.64Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP_SPIOL1.643e-1261.40Non-specific lipid-transfer protein OS=Spinacia ol... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BC08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258754 ID=DY258754; Name=DY258754; organism=Citrus clementina; type=EST; length=1246bp
TTTCTTTTATCATAGTAGTGCTGTTGAGTTTTAAATTCACTCTGTATCTT
TGTCCTATGGAGACCGCTATGTATTAGTATTATATAGTGCTTAACCTTCC
GTAATGGTAGAAGTGACTTATACATCATTTGCAATTGGAAATATTTTCAT
ATATATATATATATATATGTATGTGTATGTATGTATGTATGTATGTATGT
ATGTATATTTGTGTGTGGTGGGTGGGTGCGGCCGCCAGAACCACACCTGA
CCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGATCAATCCCTA
ACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTGTGGAGTCAGC
ATTCCTTACAAGATCAGCATCTCTACTGACTGCTCTAAGGTCCGGTGAAC
AGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGACGGAGTAGAATAAA
TGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGTCTCTCTCTAC
ACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGTTGTGTCTTAT
TGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTCTGTTTATTAA
ATGAAATCTTGCCTTGTGTTCCAAAAAAACAACAAACAGAAAGACAACTC
AATCAGGACACTTTGAAAAAAGACATAATAATAAACATACTTGTTTGCAC
TACTATATATCACACTCCCCCCCTTTTTTGGTAAAAAGTTGGATATAAAA
GAAGACATTTCTATTATTTTTTGTGCCGAAACTGGCCTTTTCCGTAAAAG
AAAAAACTTTTTTTCCCCCCCCGCGAATCCCCCCCTAAAGGGGGCGTTAA
AAAGGGTGTTTTAGTTTTTCGGGGCAGCCCCTGGCCCGGGTTTAAAAAAC
TCTTGTATGTTTTTGCCCCAAAAACACAATTTTCTCCCAATGGGAAAAAC
TCCCTTGGCGACCAAAAAGAAAAGACACACTTTTTACTCAACTGGGNTTT
AACTTTNACTATTTTTTTAAAAAACTGCGTCGGGTATAAGAGGAGAAGAA
AAAACACCCAGGGACGTCCTTCAAAAAAGAGGGAGGATAATGTGGTTGAT
GGTGGGTGCAGATATACCCCTACCACTCCCCACACACTACCAAAACCAAT
ATATACTATATTATCTTTCCCCCCCCTCCACCCAAATAAAAAATATGTAA
TATTTAAATTTGCAATTGAAAAAGAAAAACTCCACCACATCATCGA
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