DY258754

Overview
NameDY258754
Unique NameDY258754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1246
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258754_ssr149 microsatellite DY258754_ssr149:149..168. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258754_ssr174 microsatellite DY258754_ssr174:174..205. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258754_ssr217 microsatellite DY258754_ssr217:217..228. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10162 contig Ccv1_Contig10162:2..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.817e-11
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 3
Query:  231 AARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            +A+TT DR+TAC CLK AA +I  ++ N A G+P  C V+IPYKIS STDCS V+
Sbjct:   60 SAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.817e-11
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 3
Query:  231 AARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            +A+TT DR+TAC CLK AA +I  ++ N A G+P  C V+IPYKIS STDCS V+
Sbjct:   60 SAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.373e-11
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 3
Query:  222 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            + +AA+TTP RQ AC C+K AA  I  +N   A GLP  CGV+IPYKIS STDC+ V+
Sbjct:   63 LNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.373e-11
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 3
Query:  222 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            + +AA+TTP RQ AC C+K AA  I  +N   A GLP  CGV+IPYKIS STDC+ V+
Sbjct:   59 LNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 3
Query:  234 ARTTPDRQTACNCLKQAAGSI-PNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            A TTPDRQ AC CL+ AA ++ P LN   A GLP AC V+IPYKIS ST+C+ VR
Sbjct:   64 ASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.017e-11
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 3
Query:  234 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            A+TTPDRQTACNCLK        LN     G+P  CGV+IPY I + TDC+KVR
Sbjct:   60 AKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.017e-11
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 3
Query:  222 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 392
            + +AA TT DRQT C CLKQ   ++  L P+   G+P  CGV+IPY IS STDCS+V
Sbjct:   62 LNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of DY258754 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.017e-11
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 3
Query:  234 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 395
            A+TT DRQ AC CLK AA S  +L+   A  LP  C V+IPYKIS STDCSKV+
Sbjct:   61 AQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
The following BLAST results are available for this feature:
BLAST of DY258754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
NLTP1_SOLPN1.817e-1158.18Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP1_SOLLC1.817e-1158.18Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP2_GOSHI2.373e-1156.90Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI2.373e-1156.90Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP2_ARATH5.286e-1161.82Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
SCA_LILLO9.017e-1157.41Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP4_ORYSJ9.017e-1154.39Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP2_SOLCI9.017e-1161.11Non-specific lipid-transfer protein 2 OS=Solanum c... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BC08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258754 ID=DY258754; Name=DY258754; organism=Citrus clementina; type=EST; length=1246bp
TTTCTTTTATCATAGTAGTGCTGTTGAGTTTTAAATTCACTCTGTATCTT
TGTCCTATGGAGACCGCTATGTATTAGTATTATATAGTGCTTAACCTTCC
GTAATGGTAGAAGTGACTTATACATCATTTGCAATTGGAAATATTTTCAT
ATATATATATATATATATGTATGTGTATGTATGTATGTATGTATGTATGT
ATGTATATTTGTGTGTGGTGGGTGGGTGCGGCCGCCAGAACCACACCTGA
CCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGATCAATCCCTA
ACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTGTGGAGTCAGC
ATTCCTTACAAGATCAGCATCTCTACTGACTGCTCTAAGGTCCGGTGAAC
AGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGACGGAGTAGAATAAA
TGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGTCTCTCTCTAC
ACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGTTGTGTCTTAT
TGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTCTGTTTATTAA
ATGAAATCTTGCCTTGTGTTCCAAAAAAACAACAAACAGAAAGACAACTC
AATCAGGACACTTTGAAAAAAGACATAATAATAAACATACTTGTTTGCAC
TACTATATATCACACTCCCCCCCTTTTTTGGTAAAAAGTTGGATATAAAA
GAAGACATTTCTATTATTTTTTGTGCCGAAACTGGCCTTTTCCGTAAAAG
AAAAAACTTTTTTTCCCCCCCCGCGAATCCCCCCCTAAAGGGGGCGTTAA
AAAGGGTGTTTTAGTTTTTCGGGGCAGCCCCTGGCCCGGGTTTAAAAAAC
TCTTGTATGTTTTTGCCCCAAAAACACAATTTTCTCCCAATGGGAAAAAC
TCCCTTGGCGACCAAAAAGAAAAGACACACTTTTTACTCAACTGGGNTTT
AACTTTNACTATTTTTTTAAAAAACTGCGTCGGGTATAAGAGGAGAAGAA
AAAACACCCAGGGACGTCCTTCAAAAAAGAGGGAGGATAATGTGGTTGAT
GGTGGGTGCAGATATACCCCTACCACTCCCCACACACTACCAAAACCAAT
ATATACTATATTATCTTTCCCCCCCCTCCACCCAAATAAAAAATATGTAA
TATTTAAATTTGCAATTGAAAAAGAAAAACTCCACCACATCATCGA
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