DY258765

Overview
NameDY258765
Unique NameDY258765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:1210..2017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 95.1301 bits (235), Expect = 4.814e-19
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 235
            +F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  356 HFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.814e-19
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 235
            +F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  356 HFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_HUMAN (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.814e-19
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 235
            +F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  356 HFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_BOVIN (Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.814e-19
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 235
            +F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  356 HFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_XENTR (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.211e-19
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 235
            +F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  356 HFIDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_PODAN (Eukaryotic peptide chain release factor subunit 1 OS=Podospora anserina GN=SU2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.072e-18
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 2
Query:    5 FRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 238
            F D  T  E+EV  + S LEW A  Y+ FG TLEFV+++S EG+QF +GFGGIGGILRY+++    +E  DD E YDD
Sbjct:  358 FMDKETGQEMEVVSQESFLEWIAEHYKDFGTTLEFVSDRSTEGNQFVKGFGGIGGILRYKVNFEQLNEVDDDDEYYDD 435          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_CAEEL (Eukaryotic peptide chain release factor subunit 1 OS=Caenorhabditis elegans GN=erf-1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.549e-17
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFD 205
            +F DS T  ++E+ E   LLEWFAN Y+ FG  LE VT+KSQEG+QF RGFGGIGG+LRY++D+   D
Sbjct:  363 HFTDSETGQDMEIIETMPLLEWFANNYKNFGAALEIVTDKSQEGAQFVRGFGGIGGLLRYRVDLAHVD 430          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_CRYHO (Eukaryotic peptide chain release factor subunit 1 OS=Cryptosporidium hominis GN=erf1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.712e-16
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 2
Query:    5 FRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDD 220
            F+D  T AEL+V E   L EW  N Y+ +G  LEFVTNKSQEG+QF +GFGG GGILRY++D + +    DD
Sbjct:  353 FKDPETGAELDVIEILPLTEWLVNTYQNYGAQLEFVTNKSQEGNQFQKGFGGFGGILRYKVDFQDYAVVEDD 424          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_YEAST (Eukaryotic peptide chain release factor subunit 1 OS=Saccharomyces cerevisiae GN=SUP1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.472e-15
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   11 DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 244
            D AT  E++V  +  L+EW A  Y+ FG TLEF+T+KS EG+QF  GFGGIG +LRY+++     + S+D E YD+ E
Sbjct:  354 DKATGQEMDVVSEEPLIEWLAANYKNFGATLEFITDKSSEGAQFVTGFGGIGAMLRYKVNFEQLVDESED-EYYDEDE 430          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_SCHPO (Eukaryotic peptide chain release factor subunit 1 OS=Schizosaccharomyces pombe GN=sup45 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.229e-15
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 2
Query:   11 DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 244
            D  T AE+E+     L EW A  Y+ +G  LEFV+++SQEG QF +GFGGIG ++RYQLD+   D  SD  E Y DS+
Sbjct:  358 DKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRYQLDLSMLDPESD--EFYSDSD 433          
The following BLAST results are available for this feature:
BLAST of DY258765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ERF1_MOUSE4.814e-1956.41Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MESAU4.814e-1956.41Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_HUMAN4.814e-1956.41Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BOVIN4.814e-1956.41Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENTR8.211e-1956.41Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PODAN1.072e-1853.85Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CAEEL1.549e-1758.82Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CRYHO1.712e-1655.56Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_YEAST2.472e-1548.72Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_SCHPO3.229e-1550.00Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BE02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258765 ID=DY258765; Name=DY258765; organism=Citrus clementina; type=EST; length=808bp
CAACTTTCGTGATTCTGCCACCTCTGCTGAATTGGAGGTTCAGGAAAAGT
CATCGCTGCTTGAGTGGTTTGCAAATGAATACAGGAGGTTTGGTTGCACA
CTCGAGTTTGTTACCAACAAATCACAAGAGGGATCCCAGTTTTGCAGAGG
CTTTGGCGGTATTGGTGGAATACTCCGCTACCAGCTTGATATGAGATCAT
TTGATGAGTTTTCTGATGATGGAGAAATTTATGATGATTCTGAATAGCAA
TCAATCAAACCTACCCAATTGCTGGTGCAGGATGACGACGTGAAGGGCCT
GCACCAGCGCGCGATTCGTCGCGCCAACTTCGGAGTACCTATGTTCCAAA
ATGTTCCCAAGTTGCTGCTGAGGTACGATTATGTCATGTCTTAGCTGAGC
AAGCTATCTATGATTCTGTTATATGGGCTTTGTAATGGCGCTGCTGGATA
TGATCCAGAAGGGAGGAATTATGCAAAGCTACTAGCTCCAGAAGGGAGGA
ATTATGCAAAGCTACTAGCTAATGTTGGTTAGGACCTTACGAATACCTCG
CATTCAGATGATGGATATGGGGATCTCTCCCATGGCAAGCCCTAGGGGCT
TGTGGATTGAAACTGTTCTCTCAGACTTGGGTTTATCTTTTTATGGTTCT
ATTGTCTGTACAATGCATGTTAATCAGTGTGATGGATCTCCTGTTGTCTG
TCGGACTGGGTTATTTGTTTTAGGTTATGTTGTTTAAACATGCTTGTTAG
ATCTCCATCTTTGGTAGGCCATGGCTTGCTATAATAATAAAGTGATAACT
GTTTTGTT
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