DY258771 | Citrus Genome Database

Overview


Name	DY258771
Unique Name	DY258771
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1245

Libraries


Library Name	Type
AbsDev1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10167	contig	Ccv1_Contig10167:8..1252.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_PSEPK (Chaperone protein clpB OS=Pseudomonas putida (strain KT2440) GN=clpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.626e-18
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = 1

Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L+M+E+L + +IG          A +              SF+  GP+GVG+ E+ KALA + F +EEAM+R+DM+EFM K +V++L  +PPGYVGY +G  L +AVRR
Sbjct:  548 VAKMLEGEREKLLKMEELLHQRVIGQSEAVTAVANAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRR 668

[Close]

BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_PHOLL (Chaperone protein clpB OS=Photorhabdus luminescens subsp. laumondii GN=clpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.626e-18
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1

Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V +  + E  + L M++ L K +IG D      + A +              SF+  GP+GVG+ E+ KALA + F S++AM+R+DM+EFM K  VS+L  +PPGYVGY +G  L +AVRR
Sbjct:  548 VARMLESEKDKLLRMEQELHKRVIGQDEAVNAISNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFLFDSDDAMVRIDMSEFMEKHAVSRLVGAPPGYVGYEEGGYLTEAVRR 668

[Close]

BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVY (Chaperone protein clpB OS=Vibrio vulnificus (strain YJ016) GN=clpB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.430e-18
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1

Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L M+E+L K +IG     +    A +              SF+  GP+GVG+ E+ K LA + F SE+AM+R+DM+EFM K +V++L  +PPGYVGY +G  L +AVRR
Sbjct:  548 VSKMLEAEKEKLLRMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLANFMFDSEDAMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRR 668

[Close]

BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVU (Chaperone protein clpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.430e-18
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1

Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L M+E+L K +IG     +    A +              SF+  GP+GVG+ E+ K LA + F SE+AM+R+DM+EFM K +V++L  +PPGYVGY +G  L +AVRR
Sbjct:  548 VSKMLEAEKEKLLRMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLANFMFDSEDAMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRR 668

[Close]

BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_DEIRA (Chaperone protein clpB OS=Deinococcus radiodurans GN=clpB PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.430e-18
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 1

Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L ++E L   +IG D      + A +              SF+  GPSGVG+ E+AKALA + F S +AM+R+DM+E+M K TV++L  +PPGYVG+ +G QL +AVRR
Sbjct:  538 VSKLMEGEREKLLHLEEQLHGRVIGQDRAIVSVSDAIRRARAGLNDPNRPLGSFMFLGPSGVGKTELAKALAEFLFDSSDAMVRIDMSEYMEKHTVARLIGAPPGYVGFEEGGQLTEAVRR 658

[Close]

BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_CHLMU (Chaperone protein clpB OS=Chlamydia muridarum GN=clpB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.480e-18
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = 1

Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V+K  + E+ + L ++E L++ ++G        + + +S              F+  GP+GVG+ E+AKALA   F  EEAMIR DMTE+M K +VS+L  SPPGYVGY +G  L +A+RR
Sbjct:  548 VQKMLEGESEKLLVLEESLEERVVGQPFAITAVSDSIRSARVGLSDPQRPLGVFLFLGPTGVGKTELAKALAELLFNKEEAMIRFDMTEYMEKHSVSKLIGSPPGYVGYEEGGSLSEALRR 668

[Close]

BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_TREDE (Chaperone protein clpB OS=Treponema denticola GN=clpB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.851e-18
Identity = 46/121 (38.02%), Postives = 74/121 (61.16%), Query Frame = 1

Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K    E  +FL+++++L+  ++G D   +  + A +              SF+  GP+GVG+ E+A+ LA + F  E+A+ R+DM+E+M K +VS+L  +PPGYVGY +G QL +AVRR
Sbjct:  552 VAKMLASEMQKFLQLEKVLQARVVGQDEAVRVVSDAIRRNKAGLSDMNRPLGSFLCIGPTGVGKTELARTLADFLFNDEKALTRIDMSEYMEKHSVSRLIGAPPGYVGYDEGGQLTEAVRR 672

[Close]

BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_LACLM (Chaperone protein clpB OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpB PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 5.851e-18
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1

Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            + K  + E  + L + E L + ++G D   +  + A                SF+  GP+GVG+ E+AKALA   F SEE M+R+DM+E+M K +VS+L  +PPGYVGY +G QL +AVRR
Sbjct:  551 ITKLVEGEREKLLHLPETLHQRVVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHMVRIDMSEYMEKHSVSRLVGAPPGYVGYDEGGQLTEAVRR 671

[Close]

BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_LACLA (Chaperone protein clpB OS=Lactococcus lactis subsp. lactis GN=clpB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.851e-18
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1

Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            + K  + E  + L + E L + ++G D   +  + A                SF+  GP+GVG+ E+AKALA   F SEE M+R+DM+E+M K +VS+L  +PPGYVGY +G QL +AVRR
Sbjct:  551 ITKLVEGEREKLLHLPETLHQRVVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHMVRIDMSEYMEKHSVSRLVGAPPGYVGYDEGGQLTEAVRR 671

[Close]

BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_HAEIN (Chaperone protein clpB OS=Haemophilus influenzae GN=clpB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.851e-18
Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 1

Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L M++ L K +IG +        A +              SF+  GP+GVG+ E+ K LA + F SE+AM+R+DM+EFM K +VS+L  +PPGYVGY +G  L +AVRR
Sbjct:  548 VSKMMEGEKEKLLRMEDELHKRVIGQEEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRR 668

The following BLAST results are available for this feature:

BLAST of DY258771 vs. ExPASy Swiss-Prot

BLAST of DY258771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179


Match Name	E-value	Identity	Description
CLPB_PSEPK	2.626e-18	40.50	Chaperone protein clpB OS=Pseudomonas putida (stra...	[more]
CLPB_PHOLL	2.626e-18	40.50	Chaperone protein clpB OS=Photorhabdus luminescens...	[more]
CLPB_VIBVY	3.430e-18	40.50	Chaperone protein clpB OS=Vibrio vulnificus (strai...	[more]
CLPB_VIBVU	3.430e-18	40.50	Chaperone protein clpB OS=Vibrio vulnificus GN=clp...	[more]
CLPB_DEIRA	3.430e-18	41.32	Chaperone protein clpB OS=Deinococcus radiodurans ...	[more]
CLPB_CHLMU	4.480e-18	40.50	Chaperone protein clpB OS=Chlamydia muridarum GN=c...	[more]
CLPB_TREDE	5.851e-18	38.02	Chaperone protein clpB OS=Treponema denticola GN=c...	[more]
CLPB_LACLM	5.851e-18	40.50	Chaperone protein clpB OS=Lactococcus lactis subsp...	[more]
CLPB_LACLA	5.851e-18	40.50	Chaperone protein clpB OS=Lactococcus lactis subsp...	[more]
CLPB_HAEIN	5.851e-18	40.50	Chaperone protein clpB OS=Haemophilus influenzae G...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAI3BE10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY258771 ID=DY258771; Name=DY258771; organism=Citrus clementina; type=EST; length=1245bp
AACTACTTTCGAACTTTGATTCCCGTAAGCAGAGATCTTTCTGATTTGAA
GAACATGGAAACCACCTGCGCAGGTAATAACTGGTCAGAGGGTCTTCTGC
TTCCTCCGTTTGGCAGTATTGCTGATGATGATGTCATGAACGACGATCTT
GATTTTCTTAATGTCCCCCAATATGGAAGAAACCCCGACTACATGGGTTA
AGTGCAGCACTGCTTTTTTTTTTTTCTGTTTTGTTTAATTAAATAAATGA
TAGGTATACTATTACCTATCAATCATGACAATGTTTTAGTATGGGTTAGT
TCAAGCTTATAAAATTTCTTGAGACATACAGACAATCTTTTTGTTTACTT
TGGAGCTAATGATTTGCATGAACAAGGAAATAAATCAATAAGAGTTATTG
TGTGTGTCGAAAAAAAAACAAAAGAAGAAACTCATCGCTTCCTCGAGATG
GATGAGATTCTTAAAAAGACATTGATTGGTCATGACTAGCCTGAAAAAGG
TACTAATCGTGCAAACCAGAGTGTTCTTGTTCGACCCAAAAAACCCCCCC
GACCAGTTGCTAGTTTCATCGTTTCTGGTCCTTCTGGTGTCGGGAGGGCC
GAGGTGGCCAAAGCACTGGCTGCCTATTACTTTGGCTCAGAGGAGGCCAT
GATCAGGCTTGATATGACCGAGTTCATGGGGAAACGCACTGTTTCCCAGC
TCAGTGTTTCACCACCTGGTTATGTGGGATACCCTGACGGGGATCAGCTG
AAAGATGCTGTTCGCCGTCCCCTTAGAGGGGAGAACCCGGTGATGAATTT
GAAAAGCCACACCCCCAGTCTTAAAAAAGCCTGTTAATTTTCCCCCCGGA
GAGAAAAGTGTAACACGGGGAAAAATCCAACTTGGGGGCTCCCGGGACCC
GCTGAAAAAGGAAGAAAACCTTAGGTTTTTTTTCCCAAATTTGTCAAACG
GGGCCCCCCCCTTCCTGTTTTTCAACTAATACCTCCCCCCAACAACCCAC
CCCCTTTTTTTTCTCGGGGATTTCGCCCGGGAGGAAAAAACGAAAAATCG
GCAGTCGCTGTTTTTAAGAGGACCAAATTTTCAAAAAGGGGAAAAACGAA
AAGGGCCCCCCGCGGGGGGCGAAGACCCACCCCCCCCCCCCCCCCCCCCC
CCCCAAAATATTTTTTTTCTCCCCCGGGAAAAAAACCAGGAAAAAAATTT
CCTTTCCTCCTCATAAACACACCCCGCGGGGGGAAAGGGAGCGGG