DY258771

Overview
NameDY258771
Unique NameDY258771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1245
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPC_STAAC (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 48/119 (40.34%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:  412 KKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            K  + E+ + L +++ L + +IG        ++A +              SFI  GP+GVG+ E+A+ALA   FG ++AMIR+DM+EFM K  VS+L  +PPGYVG+ DG QL + VRR
Sbjct:  490 KINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRR 608
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPC_STAAB (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpC PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 48/119 (40.34%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:  412 KKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            K  + E+ + L +++ L + +IG        ++A +              SFI  GP+GVG+ E+A+ALA   FG ++AMIR+DM+EFM K  VS+L  +PPGYVG+ DG QL + VRR
Sbjct:  490 KINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRR 608
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPC_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 48/119 (40.34%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:  412 KKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            K  + E+ + L +++ L + +IG        ++A +              SFI  GP+GVG+ E+A+ALA   FG ++AMIR+DM+EFM K  VS+L  +PPGYVG+ DG QL + VRR
Sbjct:  490 KINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRR 608
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPC_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 48/119 (40.34%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:  412 KKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            K  + E+ + L +++ L + +IG        ++A +              SFI  GP+GVG+ E+A+ALA   FG ++AMIR+DM+EFM K  VS+L  +PPGYVG+ DG QL + VRR
Sbjct:  490 KINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRR 608
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L M+++L   ++G        + A +              SF+  GP+GVG+ E+ K LA++ F SE+AM+R+DM+EFM K +V++L  +PPGYVGY +G  L +AVRR
Sbjct:  548 VSKMLEAEKEKLLRMEDVLHNRVVGQSEAVAVVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLASFMFDSEDAMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRR 668
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L M+++L K +IG     +    A +              SF+  GP+GVG+ E+ K LA + F SE+AM+R+DM+EFM K +V++L  +PPGYVGY +G  L +AVRR
Sbjct:  548 VSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRR 668
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_STRCO (Chaperone protein clpB OS=Streptomyces coelicolor GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 48/114 (42.11%), Postives = 69/114 (60.53%), Query Frame = 1 
Query:  427 ETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            ET + L M++ L K LIG     +  + A +              SF+  GP+GVG+ E+AKALA + F  E AM+R+DM+E+  K +V++L  +PPGYVGY +G QL +AVRR
Sbjct:  559 ETQKLLRMEDELGKRLIGQTQAVRAVSDAVRRSRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRIDMSEYSEKHSVARLVGAPPGYVGYEEGGQLTEAVRR 672
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_SHIFL (Chaperone protein clpB OS=Shigella flexneri GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V +  + E  + L M++ L   +IG +      + A +              SF+  GP+GVG+ E+ KALA + F S+EAM+R+DM+EFM K +VS+L  +PPGYVGY +G  L +AVRR
Sbjct:  548 VSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRR 668
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_RALSO (Chaperone protein clpB OS=Ralstonia solanacearum GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L M++ L + ++G D   +  + A +              SF+  GP+GVG+ E+ KALA + F SEE +IR+DM+EFM K +VS+L  +PPGYVGY +G  L +AVRR
Sbjct:  551 VSKMMQGERDKLLRMEDRLHERVVGQDEAVRLVSDAIRRSRAGIADENKPYGSFLFLGPTGVGKTELCKALAGFLFDSEEHLIRIDMSEFMEKHSVSRLIGAPPGYVGYEEGGYLTEAVRR 671
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMB (Chaperone protein clpB OS=Neisseria meningitidis serogroup B GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L+M+E+L + ++G D   +  + A +              SF+  GP+GVG+ E+ KALA + F SE+ +IR+DM+E+M K  V++L  +PPGYVGY +G  L + VRR
Sbjct:  552 VSKMMEGERDKLLKMEEVLHRRVVGQDEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKALAGFLFDSEDHLIRIDMSEYMEKHAVARLIGAPPGYVGYEEGGYLTEQVRR 672
The following BLAST results are available for this feature:
BLAST of DY258771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
CLPC_STAAC9.980e-1840.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAB9.980e-1840.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA89.980e-1840.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA39.980e-1840.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_VIBPA9.980e-1838.02Chaperone protein clpB OS=Vibrio parahaemolyticus ... [more]
CLPB_VIBCH9.980e-1839.67Chaperone protein clpB OS=Vibrio cholerae GN=clpB ... [more]
CLPB_STRCO9.980e-1842.11Chaperone protein clpB OS=Streptomyces coelicolor ... [more]
CLPB_SHIFL9.980e-1839.67Chaperone protein clpB OS=Shigella flexneri GN=clp... [more]
CLPB_RALSO9.980e-1840.50Chaperone protein clpB OS=Ralstonia solanacearum G... [more]
CLPB_NEIMB9.980e-1838.02Chaperone protein clpB OS=Neisseria meningitidis s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BE10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258771 ID=DY258771; Name=DY258771; organism=Citrus clementina; type=EST; length=1245bp
AACTACTTTCGAACTTTGATTCCCGTAAGCAGAGATCTTTCTGATTTGAA
GAACATGGAAACCACCTGCGCAGGTAATAACTGGTCAGAGGGTCTTCTGC
TTCCTCCGTTTGGCAGTATTGCTGATGATGATGTCATGAACGACGATCTT
GATTTTCTTAATGTCCCCCAATATGGAAGAAACCCCGACTACATGGGTTA
AGTGCAGCACTGCTTTTTTTTTTTTCTGTTTTGTTTAATTAAATAAATGA
TAGGTATACTATTACCTATCAATCATGACAATGTTTTAGTATGGGTTAGT
TCAAGCTTATAAAATTTCTTGAGACATACAGACAATCTTTTTGTTTACTT
TGGAGCTAATGATTTGCATGAACAAGGAAATAAATCAATAAGAGTTATTG
TGTGTGTCGAAAAAAAAACAAAAGAAGAAACTCATCGCTTCCTCGAGATG
GATGAGATTCTTAAAAAGACATTGATTGGTCATGACTAGCCTGAAAAAGG
TACTAATCGTGCAAACCAGAGTGTTCTTGTTCGACCCAAAAAACCCCCCC
GACCAGTTGCTAGTTTCATCGTTTCTGGTCCTTCTGGTGTCGGGAGGGCC
GAGGTGGCCAAAGCACTGGCTGCCTATTACTTTGGCTCAGAGGAGGCCAT
GATCAGGCTTGATATGACCGAGTTCATGGGGAAACGCACTGTTTCCCAGC
TCAGTGTTTCACCACCTGGTTATGTGGGATACCCTGACGGGGATCAGCTG
AAAGATGCTGTTCGCCGTCCCCTTAGAGGGGAGAACCCGGTGATGAATTT
GAAAAGCCACACCCCCAGTCTTAAAAAAGCCTGTTAATTTTCCCCCCGGA
GAGAAAAGTGTAACACGGGGAAAAATCCAACTTGGGGGCTCCCGGGACCC
GCTGAAAAAGGAAGAAAACCTTAGGTTTTTTTTCCCAAATTTGTCAAACG
GGGCCCCCCCCTTCCTGTTTTTCAACTAATACCTCCCCCCAACAACCCAC
CCCCTTTTTTTTCTCGGGGATTTCGCCCGGGAGGAAAAAACGAAAAATCG
GCAGTCGCTGTTTTTAAGAGGACCAAATTTTCAAAAAGGGGAAAAACGAA
AAGGGCCCCCCGCGGGGGGCGAAGACCCACCCCCCCCCCCCCCCCCCCCC
CCCCAAAATATTTTTTTTCTCCCCCGGGAAAAAAACCAGGAAAAAAATTT
CCTTTCCTCCTCATAAACACACCCCGCGGGGGGAAAGGGAGCGGG
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