DY258771

Overview
NameDY258771
Unique NameDY258771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1245
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10167 contig Ccv1_Contig10167:8..1252. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMA (Chaperone protein clpB OS=Neisseria meningitidis serogroup A GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L+M+E+L + ++G D   +  + A +              SF+  GP+GVG+ E+ KALA + F SE+ +IR+DM+E+M K  V++L  +PPGYVGY +G  L + VRR
Sbjct:  552 VSKMMEGERDKLLKMEEVLHRRVVGQDEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKALAGFLFDSEDHLIRIDMSEYMEKHAVARLIGAPPGYVGYEEGGYLTEQVRR 672
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_LISMO (Chaperone protein clpB OS=Listeria monocytogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 50/121 (41.32%), Postives = 73/121 (60.33%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L++ ++L + +IG D   +  + A                SFI  GP+GVG+ E+AKALA   F SE+ MIR+DM+E+M K +VS+L  +PPGY+GY +G QL +AVRR
Sbjct:  554 VTKLVEGEREKLLKLADVLHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSFIFLGPTGVGKTELAKALAFNMFDSEDHMIRIDMSEYMEKHSVSRLVGAPPGYIGYEEGGQLTEAVRR 674
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_ENTFA (Chaperone protein clpB OS=Enterococcus faecalis GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + ++++E L K +IG D      + A                SF+  GP+GVG+ E+AKALA   F SE+ M+R+DM+E+M K  VS+L  +PPGYVGY +G QL +AVRR
Sbjct:  551 VTKLVEGEREKLMKLNETLHKRVIGQDEAVDAVSDAVIRSRAGLQDPNRPLGSFLFLGPTGVGKTELAKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEAVRR 671
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_ECOLI (Chaperone protein clpB OS=Escherichia coli (strain K12) GN=clpB PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V +  + E  + L M++ L   +IG +      + A +              SF+  GP+GVG+ E+ KALA + F S+EAM+R+DM+EFM K +VS+L  +PPGYVGY +G  L +AVRR
Sbjct:  548 VSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRR 668
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_ECOL6 (Chaperone protein clpB OS=Escherichia coli O6 GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V +  + E  + L M++ L   +IG +      + A +              SF+  GP+GVG+ E+ KALA + F S+EAM+R+DM+EFM K +VS+L  +PPGYVGY +G  L +AVRR
Sbjct:  548 VSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRR 668
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_ECO57 (Chaperone protein clpB OS=Escherichia coli O157:H7 GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V +  + E  + L M++ L   +IG +      + A +              SF+  GP+GVG+ E+ KALA + F S+EAM+R+DM+EFM K +VS+L  +PPGYVGY +G  L +AVRR
Sbjct:  548 VSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRR 668
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_CHLTR (Chaperone protein clpB OS=Chlamydia trachomatis GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 48/121 (39.67%), Postives = 72/121 (59.50%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V+K  + E+ + L ++E L++ ++G        + + ++              F+  GP+GVG+ E+AKALA   F  EEAMIR DMTE+M K +VS+L  SPPGYVGY +G  L +A+RR
Sbjct:  548 VQKMLEGESEKLLVLEESLEERVVGQPFAIAAVSDSIRAARVGLSDPQRPLGVFLFLGPTGVGKTELAKALAELLFNKEEAMIRFDMTEYMEKHSVSKLIGSPPGYVGYEEGGSLSEALRR 668
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_AQUAE (Chaperone protein clpB OS=Aquifex aeolicus GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V +  +EE  + L++++ L K ++  +   K    A +             ASF+  GP+GVG+ E++KALA   FG E+A+IRLDM+EF  + +V++L  +PPGYVGY +G +L +AVRR
Sbjct:  669 VSRLKEEEMQKLLKLEDELHKRVVDQEHAVKAVAEAIRRARAGLKDPKRPIASFLFLGPTGVGKTELSKALAELLFGDEDALIRLDMSEFKEEHSVAKLIGAPPGYVGYEEGGKLTEAVRR 789
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.980e-18
Identity = 45/121 (37.19%), Postives = 74/121 (61.16%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V +  + E  + L+++  L + +IG     +  + A +              SF+  GP+GVG+ E+A+ALA + F +++A++RLDM+E+M K +VS+L  +PPGYVGY +G QL +AVRR
Sbjct:  557 VNRLLESERQKLLQLESHLHQRVIGQQEAVEAVSAAIRRARAGMKDPNRPIGSFLFMGPTGVGKTELARALAQFLFDADDALVRLDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLSEAVRR 677
[Close]
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_STAAW (Chaperone protein clpB OS=Staphylococcus aureus (strain MW2) GN=clpB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.303e-17
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L + +IL K ++G D      + A                SF+  GP+GVG+ E+AK+LAA  F SE+ MIR+DM+E+M K  VS+L  +PPGY+G+ +G QL +AVRR
Sbjct:  552 VSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYIGHDEGGQLTEAVRR 672
The following BLAST results are available for this feature:
BLAST of DY258771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
CLPB_NEIMA9.980e-1838.02Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_LISMO9.980e-1841.32Chaperone protein clpB OS=Listeria monocytogenes G... [more]
CLPB_ENTFA9.980e-1841.32Chaperone protein clpB OS=Enterococcus faecalis GN... [more]
CLPB_ECOLI9.980e-1839.67Chaperone protein clpB OS=Escherichia coli (strain... [more]
CLPB_ECOL69.980e-1839.67Chaperone protein clpB OS=Escherichia coli O6 GN=c... [more]
CLPB_ECO579.980e-1839.67Chaperone protein clpB OS=Escherichia coli O157:H7... [more]
CLPB_CHLTR9.980e-1839.67Chaperone protein clpB OS=Chlamydia trachomatis GN... [more]
CLPB_AQUAE9.980e-1838.84Chaperone protein clpB OS=Aquifex aeolicus GN=clpB... [more]
CLPB1_ANASP9.980e-1837.19Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]
CLPB_STAAW1.303e-1740.50Chaperone protein clpB OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BE10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258771 ID=DY258771; Name=DY258771; organism=Citrus clementina; type=EST; length=1245bp
AACTACTTTCGAACTTTGATTCCCGTAAGCAGAGATCTTTCTGATTTGAA
GAACATGGAAACCACCTGCGCAGGTAATAACTGGTCAGAGGGTCTTCTGC
TTCCTCCGTTTGGCAGTATTGCTGATGATGATGTCATGAACGACGATCTT
GATTTTCTTAATGTCCCCCAATATGGAAGAAACCCCGACTACATGGGTTA
AGTGCAGCACTGCTTTTTTTTTTTTCTGTTTTGTTTAATTAAATAAATGA
TAGGTATACTATTACCTATCAATCATGACAATGTTTTAGTATGGGTTAGT
TCAAGCTTATAAAATTTCTTGAGACATACAGACAATCTTTTTGTTTACTT
TGGAGCTAATGATTTGCATGAACAAGGAAATAAATCAATAAGAGTTATTG
TGTGTGTCGAAAAAAAAACAAAAGAAGAAACTCATCGCTTCCTCGAGATG
GATGAGATTCTTAAAAAGACATTGATTGGTCATGACTAGCCTGAAAAAGG
TACTAATCGTGCAAACCAGAGTGTTCTTGTTCGACCCAAAAAACCCCCCC
GACCAGTTGCTAGTTTCATCGTTTCTGGTCCTTCTGGTGTCGGGAGGGCC
GAGGTGGCCAAAGCACTGGCTGCCTATTACTTTGGCTCAGAGGAGGCCAT
GATCAGGCTTGATATGACCGAGTTCATGGGGAAACGCACTGTTTCCCAGC
TCAGTGTTTCACCACCTGGTTATGTGGGATACCCTGACGGGGATCAGCTG
AAAGATGCTGTTCGCCGTCCCCTTAGAGGGGAGAACCCGGTGATGAATTT
GAAAAGCCACACCCCCAGTCTTAAAAAAGCCTGTTAATTTTCCCCCCGGA
GAGAAAAGTGTAACACGGGGAAAAATCCAACTTGGGGGCTCCCGGGACCC
GCTGAAAAAGGAAGAAAACCTTAGGTTTTTTTTCCCAAATTTGTCAAACG
GGGCCCCCCCCTTCCTGTTTTTCAACTAATACCTCCCCCCAACAACCCAC
CCCCTTTTTTTTCTCGGGGATTTCGCCCGGGAGGAAAAAACGAAAAATCG
GCAGTCGCTGTTTTTAAGAGGACCAAATTTTCAAAAAGGGGAAAAACGAA
AAGGGCCCCCCGCGGGGGGCGAAGACCCACCCCCCCCCCCCCCCCCCCCC
CCCCAAAATATTTTTTTTCTCCCCCGGGAAAAAAACCAGGAAAAAAATTT
CCTTTCCTCCTCATAAACACACCCCGCGGGGGGAAAGGGAGCGGG
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