DY258771

Overview
NameDY258771
Unique NameDY258771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1245
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10167 contig Ccv1_Contig10167:8..1252. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_PASMU (Chaperone protein clpB OS=Pasteurella multocida GN=clpB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.702e-17
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L M+E L K +IG     +  + A +              SF+  GP+GVG+ E+ K LA + F  E AM+R+DM+EFM K +VS+L  +PPGYVGY +G  L +AVRR
Sbjct:  547 VAKMMEGEKEKLLRMEEELHKRVIGQHEAIEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDDENAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRR 667          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_BRUSU (Chaperone protein clpB OS=Brucella suis GN=clpB PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.702e-17
Identity = 46/121 (38.02%), Postives = 73/121 (60.33%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V++  + E  + L M++ + K ++G     +  ++A +              SFI  GP+GVG+ E+ KALA++ F  + AM+R+DM+EFM K +VS+L  +PPGYVGY +G  L +AVRR
Sbjct:  548 VDRMLEGEREKLLRMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALASFLFQDDTAMVRIDMSEFMEKHSVSRLIGAPPGYVGYEEGGVLTEAVRR 668          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_BRUME (Chaperone protein clpB OS=Brucella melitensis GN=clpB PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.702e-17
Identity = 46/121 (38.02%), Postives = 73/121 (60.33%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V++  + E  + L M++ + K ++G     +  ++A +              SFI  GP+GVG+ E+ KALA++ F  + AM+R+DM+EFM K +VS+L  +PPGYVGY +G  L +AVRR
Sbjct:  548 VDRMLEGEREKLLRMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALASFLFQDDTAMVRIDMSEFMEKHSVSRLIGAPPGYVGYEEGGVLTEAVRR 668          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.702e-17
Identity = 46/121 (38.02%), Postives = 73/121 (60.33%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V+K  + +  + L M++ L K+++G     +  ++A +              SFI  GP+GVG+ E+ K+LA + F  E AM+RLDM+E+M K +V++L  +PPGYVGY +G  L +AVRR
Sbjct:  550 VDKMLEGQREKLLRMEDELAKSVVGQGEAVQAVSKAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTELTKSLARFLFDDETAMVRLDMSEYMEKHSVARLIGAPPGYVGYEEGGALTEAVRR 670          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_STAES (Chaperone protein clpB OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.223e-17
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L + +IL K ++G D      + A                SF+  GP+GVG+ E+AK+LA+  F SE+ MIR+DM+E+M K  VS+L  +PPGYVG+ +G QL +AVRR
Sbjct:  552 VSKLVETEREKLLSLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLASSLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYVGHDEGGQLTEAVRR 672          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_STAEQ (Chaperone protein clpB OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.223e-17
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L + +IL K ++G D      + A                SF+  GP+GVG+ E+AK+LA+  F SE+ MIR+DM+E+M K  VS+L  +PPGYVG+ +G QL +AVRR
Sbjct:  552 VSKLVETEREKLLSLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLASSLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYVGHDEGGQLTEAVRR 672          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_RICFE (Chaperone protein clpB OS=Rickettsia felis GN=clpB PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.223e-17
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            ++     E  R L M++ L++++IG D   KG + A +              SF+  GP+GVG+ E+ KALA++ F    A++R+DM+E+M K  +S+L  +PPGY+GY  G  L +AVRR
Sbjct:  547 IDTMLSSERERLLVMEQKLRESVIGQDEAIKGVSDAVRRSRAGIQDINRPLGSFLFLGPTGVGKTELTKALASFLFDDRNAILRIDMSEYMEKHAISRLIGAPPGYIGYDQGGVLTEAVRR 667          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_RHOPA (Chaperone protein clpB OS=Rhodopseudomonas palustris GN=clpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.223e-17
Identity = 49/123 (39.84%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  400 VCVEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V V+K  + E  + L M+E L + ++G        + A +              SF+  GP+GVG+ E+ KALA Y F  E AM+R+DM+EFM K +V++L  +PPGYVGY +G  L +AVRR
Sbjct:  547 VPVDKMLEGEKEKLLRMEEQLGQRVVGQFEAVHAVSTAVRRARAGLQDPNRPMGSFMFLGPTGVGKTELTKALAEYLFDDETAMVRIDMSEFMEKHSVARLIGAPPGYVGYDEGGVLTEAVRR 669          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_CLOTE (Chaperone protein clpB OS=Clostridium tetani GN=clpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.223e-17
Identity = 50/121 (41.32%), Postives = 70/121 (57.85%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L +++ LK  +IG D   +  + A                SFI  GP+GVG+ E+AK L    F SEE +IR+DM+E+M K +VS+L  +PPGYVGY +G QL +AVRR
Sbjct:  554 VTKLIEGEKDKLLRLEDELKSRVIGQDEAVEAVSNAVLRARAGMKDPQKPIGSFIFLGPTGVGKTELAKTLCKNLFDSEENIIRIDMSEYMEKYSVSRLIGAPPGYVGYEEGGQLTEAVRR 674          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_CHLCV (Chaperone protein clpB OS=Chlamydophila caviae GN=clpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.223e-17
Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            ++K  + E  + L ++E L++ ++G        + + ++              F+  GP+GVG+ E+AKALA   F  EEAM+R DMTE+M K +VS+L  SPPGYVGY +G  L +A+RR
Sbjct:  548 IQKMLEGEAEKLLVLEESLEERVVGQPFAISAVSDSIRAARVGLSDPQRPLGVFLFLGPTGVGKTELAKALADLLFNKEEAMVRFDMTEYMEKHSVSKLIGSPPGYVGYEEGGSLSEALRR 668          
The following BLAST results are available for this feature:
BLAST of DY258771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
CLPB_PASMU1.702e-1740.50Chaperone protein clpB OS=Pasteurella multocida GN... [more]
CLPB_BRUSU1.702e-1738.02Chaperone protein clpB OS=Brucella suis GN=clpB PE... [more]
CLPB_BRUME1.702e-1738.02Chaperone protein clpB OS=Brucella melitensis GN=c... [more]
CLPB_AGRT51.702e-1738.02Chaperone protein clpB OS=Agrobacterium tumefacien... [more]
CLPB_STAES2.223e-1740.50Chaperone protein clpB OS=Staphylococcus epidermid... [more]
CLPB_STAEQ2.223e-1740.50Chaperone protein clpB OS=Staphylococcus epidermid... [more]
CLPB_RICFE2.223e-1737.19Chaperone protein clpB OS=Rickettsia felis GN=clpB... [more]
CLPB_RHOPA2.223e-1739.84Chaperone protein clpB OS=Rhodopseudomonas palustr... [more]
CLPB_CLOTE2.223e-1741.32Chaperone protein clpB OS=Clostridium tetani GN=cl... [more]
CLPB_CHLCV2.223e-1738.02Chaperone protein clpB OS=Chlamydophila caviae GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BE10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258771 ID=DY258771; Name=DY258771; organism=Citrus clementina; type=EST; length=1245bp
AACTACTTTCGAACTTTGATTCCCGTAAGCAGAGATCTTTCTGATTTGAA
GAACATGGAAACCACCTGCGCAGGTAATAACTGGTCAGAGGGTCTTCTGC
TTCCTCCGTTTGGCAGTATTGCTGATGATGATGTCATGAACGACGATCTT
GATTTTCTTAATGTCCCCCAATATGGAAGAAACCCCGACTACATGGGTTA
AGTGCAGCACTGCTTTTTTTTTTTTCTGTTTTGTTTAATTAAATAAATGA
TAGGTATACTATTACCTATCAATCATGACAATGTTTTAGTATGGGTTAGT
TCAAGCTTATAAAATTTCTTGAGACATACAGACAATCTTTTTGTTTACTT
TGGAGCTAATGATTTGCATGAACAAGGAAATAAATCAATAAGAGTTATTG
TGTGTGTCGAAAAAAAAACAAAAGAAGAAACTCATCGCTTCCTCGAGATG
GATGAGATTCTTAAAAAGACATTGATTGGTCATGACTAGCCTGAAAAAGG
TACTAATCGTGCAAACCAGAGTGTTCTTGTTCGACCCAAAAAACCCCCCC
GACCAGTTGCTAGTTTCATCGTTTCTGGTCCTTCTGGTGTCGGGAGGGCC
GAGGTGGCCAAAGCACTGGCTGCCTATTACTTTGGCTCAGAGGAGGCCAT
GATCAGGCTTGATATGACCGAGTTCATGGGGAAACGCACTGTTTCCCAGC
TCAGTGTTTCACCACCTGGTTATGTGGGATACCCTGACGGGGATCAGCTG
AAAGATGCTGTTCGCCGTCCCCTTAGAGGGGAGAACCCGGTGATGAATTT
GAAAAGCCACACCCCCAGTCTTAAAAAAGCCTGTTAATTTTCCCCCCGGA
GAGAAAAGTGTAACACGGGGAAAAATCCAACTTGGGGGCTCCCGGGACCC
GCTGAAAAAGGAAGAAAACCTTAGGTTTTTTTTCCCAAATTTGTCAAACG
GGGCCCCCCCCTTCCTGTTTTTCAACTAATACCTCCCCCCAACAACCCAC
CCCCTTTTTTTTCTCGGGGATTTCGCCCGGGAGGAAAAAACGAAAAATCG
GCAGTCGCTGTTTTTAAGAGGACCAAATTTTCAAAAAGGGGAAAAACGAA
AAGGGCCCCCCGCGGGGGGCGAAGACCCACCCCCCCCCCCCCCCCCCCCC
CCCCAAAATATTTTTTTTCTCCCCCGGGAAAAAAACCAGGAAAAAAATTT
CCTTTCCTCCTCATAAACACACCCCGCGGGGGGAAAGGGAGCGGG
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