DY258778

Overview
NameDY258778
Unique NameDY258778
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1216
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1236 contig Ccv1_Contig1236:1..1216. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP4A2_RAT (Cytochrome P450 4A2 OS=Rattus norvegicus GN=Cyp4a2 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.449e-21
Identity = 62/201 (30.85%), Postives = 100/201 (49.75%), Query Frame = 2
Query:  134 KTMMATAMPQEEQEKGPK----DLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVEL-GGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAI 721
            KT  A    +EE +K  K    D L +++ A      +++D D+  E  +F F G  TT++ ++W    LA HP  Q   REEV  + G     T D + ++   +M + E+LRLY P+ +  R   + V    G  IP+G  + I I  +HH+ + W      F+P+RFS     + +H   ++PF  G R C+G+  A+
Sbjct:  262 KTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYW-PNPKVFDPSRFSPD---SPRHSHAYLPFSGGARNCIGKQFAM 458          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP17A_SQUAC (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Squalus acanthias GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.449e-21
Identity = 69/251 (27.49%), Postives = 113/251 (45.02%), Query Frame = 2
Query:    8 LHPWLQIFADKKEHKLMET*QADQEITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSN--------ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYP--PIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARF-SEGVARAAKHPVGFIPFGLGVRTCVGQNLAILQ 727
            + PWLQ F ++  H L +       I  +   + KAN +S +                  DL  ++++A  N+ +N        +TD  ++      F AG +T+S    W  + L  HP  Q   +EE+    G    P   D   +  L+  ++E LR+ P  P++     A AD  +G Y IP+GT ++I + A+HHD+  W    + F+P RF  E           ++PFG G R C+G+ LA ++
Sbjct:  222 IFPWLQFFPNENLHTLKQCIATRDSILQKKFEDHKANYSSDSAN----------------DLFNILLKAKMNAENNNSSVHEAGLTDDHMVMTVADIFGAGVETSSTAFAWMIIYLIHHPEVQKKIQEEIDSNIGFERTPKMSDKGNMNFLNATIHEILRIQPVSPLLIP-HVALADSSIGDYTIPKGTRVIINLWAIHHDEKEW-KNPDAFDPGRFLDEDGKYVCSSSESYLPFGAGTRVCLGEMLARME 454          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP4AP_PIG (Cytochrome P450 4A25 OS=Sus scrofa GN=CYP4A25 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.471e-21
Identity = 55/185 (29.73%), Postives = 97/185 (52.43%), Query Frame = 2
Query:  170 QEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVEL-GGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAI 721
            ++K   D L +++ A     ++++D D+  E  +F F G  TT++ ++W    LA HP  Q   REE+  + G     T D + ++   +M + E+LRLYPP+    R     +    G  +P G  L + + ++HH+  +W     +F+P+RF+ G   +A+H   F+PF  G R C+G+  A+
Sbjct:  278 RKKRHLDFLDILLLARMEKGNSLSDTDLRAEVDTFMFEGHDTTASGISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPGVSRELSKPITFPDGRSLPAGIILSLSVYSLHHNPQVW-PNPEEFDPSRFAPG---SARHSHAFMPFSGGSRNCIGKQFAM 458          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP4X1_HUMAN (Cytochrome P450 4X1 OS=Homo sapiens GN=CYP4X1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.227e-21
Identity = 59/217 (27.19%), Postives = 107/217 (49.31%), Query Frame = 2
Query:   80 EITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVEL-GGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAILQ 727
            + T+ + +ERK       K++ A        ++  +D L +++ A   S S+ +D D+  E  +F  AG  T +  ++W    LA++P  Q   REEV  + G     T D + ++   +M + E+ RL P + +  R     +    G  +P G  +++ I  +HH+ A+W      F+P RFS+  +   +HP  ++PF  G R C+GQ  A+++
Sbjct:  256 QYTDTIIQERK-------KSLQAGVKQDNTPKRKYQDFLDIVLSAKDESGSSFSDIDVHSEVSTFLLAGHDTLAASISWILYCLALNPEHQERCREEVRGILGDGSSITWDQLGEMSYTTMCIKETCRLIPAVPSISRDLSKPLTFPDGCTLPAGITVVLSIWGLHHNPAVW-KNPKVFDPLRFSQENS-DQRHPYAYLPFSAGSRNCIGQEFAMIE 463          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP4D2_DROME (Cytochrome P450 4d2 OS=Drosophila melanogaster GN=Cyp4d2 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 3.227e-21
Identity = 73/224 (32.59%), Postives = 116/224 (51.79%), Query Frame = 2
Query:   80 EITNEVDRERKAN--GNSKNKTMMATAMPQEEQ----EKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGS-RDLP-TRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAILQ 727
            + T  + RER+     NSK  T      P+EE     +K    LL +++Q++ + +  ++D DI EE  +F F G  TT++ +++    ++ HP  Q   ++E+  V G  R  P T  D+ +LK +  ++ ESLRL+PP+    R    DVE+ G  IP GT   + I  +  D   + S  ++F P RF   V +   HP  +IPF  G R C+GQ  A+L+
Sbjct:  245 DFTENIIRERRETLVNNSKETT------PEEEVNFLGQKRRMALLDVLLQSTIDGAP-LSDEDIREEVDTFMFEGHDTTTSAISFCLYEISRHPEVQQRLQQEIRDVLGEDRKSPVTLRDLGELKFMENVIKESLRLHPPVPMIGRWFAEDVEIRGKHIPAGTNFTMGIFVLLRDPEYFES-PDEFRPERFDADVPQI--HPYAYIPFSAGPRNCIGQKFAMLE 458          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP4CA_MOUSE (Cytochrome P450 4A12A OS=Mus musculus GN=Cyp4a12a PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.227e-21
Identity = 56/192 (29.17%), Postives = 102/192 (53.12%), Query Frame = 2
Query:  161 QEEQEKGPK----DLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVEL-GGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAI 721
            +EE EK  K    D L +++ A   +  +++D D+  E  +F F G  TT++ ++W    LA +P  Q   R+E+  + G     T +D+ K+   +M + E+LR+YPP+ +  R   + V    G  +P+G  +++    +HH+  +W      F+P+RF+ G   +++H   F+PF  G R C+G+  A+
Sbjct:  275 EEELEKLKKKRRLDFLDILLFARMENGKSLSDKDLRAEVDTFMFEGHDTTASGISWIFYALATNPEHQQRCRKEIQSLLGDGTSITWNDLDKMPYTTMCIKEALRIYPPVPSVSRELSSPVTFPDGRSLPKGIHVMLSFYGLHHNPTVW-PNPEVFDPSRFAPG---SSRHSHSFLPFSGGARNCIGKQFAM 462          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP3AJ_CAPAE (Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus GN=CYP3A19 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.227e-21
Identity = 53/161 (32.92%), Postives = 91/161 (56.52%), Query Frame = 2
Query:  242 DYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAIL 724
            + +++ +   F F G +TTS  L++    LA HP  Q   +EE+     ++  PT D + +++ L M++NE+LR++P      R  K DVE+ G  IP+GT +++P+  +H++   W  E  +F P RFS+   +   +P  ++PFG G R CVG   A++
Sbjct:    3 EVELVAQTTIFIFGGYETTSTSLSFIIYELATHPDVQQKLQEEIDATFPNKAPPTYDALVQMEYLDMVVNETLRMFPIAGRLERLCKKDVEIHGVSIPKGTTVMVPLFVLHNNPEFW-PEPEEFRPERFSK-KNKDGINPYVYLPFGTGPRNCVGMRFALM 161          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP3AI_RAT (Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a18 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.227e-21
Identity = 64/201 (31.84%), Postives = 104/201 (51.74%), Query Frame = 2
Query:  134 KTMMATAMPQEEQEKGPKDLLGLMIQASSN----SSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAIL 724
            KTM    +  +  +K   D L LM+   ++    S   ++D ++  +   F F G   TS  +++    LA  P+ Q   + E+ R   ++   T D + +++ L M++NESLRLYP      R +K DVE+ G  IP+GT + IPI  +H +   W  E  +FNP RFS+   + +  P  ++PFG G R C+G   A++
Sbjct:  254 KTMKKNRL--DSNQKNRVDFLQLMMNTQNSKGQESQKALSDLEMAAQAIIFIFGGYDATSTSISFIMYELATRPNVQKKLQNEIDRALPNKAPVTYDALMEMEYLDMVVNESLRLYPIATRLDRVSKKDVEINGVFIPKGTVVTIPIYPLHRNPEYW-LEPEEFNPERFSK-ENKGSIDPYVYLPFGNGPRNCIGMRFALI 450          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP343_HUMAN (Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.227e-21
Identity = 63/210 (30.00%), Postives = 109/210 (51.90%), Query Frame = 2
Query:  164 EEQEKGPKDLLGLMIQASSNSSSN----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAILQTS*PLPIYSHASHFVWPP 781
            ++++K   D    MI + ++  +     ++D +++ +     FA   TTS  L +    LA HP  Q   +EE+  V  ++   T D + +++ L M++NE+LRL+P +    R  K D+E+ G  IP+G  +++PI A+HHD   W +E   F P RFS+   + +     +IPFG G R C+G   A+  T+  L +     +F + P
Sbjct:  262 KDKQKHRVDFFQQMIDSQNSKETKSHKALSDLELVAQSIIIIFAAYDTTSTTLPFIMYELATHPDVQQKLQEEIDAVLPNKAPVTYDALVQMEYLDMVVNETLRLFPVVSRVTRVCKKDIEINGVFIPKGLAVMVPIYALHHDPKYW-TEPEKFCPERFSK-KNKDSIDLYRYIPFGAGPRNCIGMRFAL--TNIKLAVIRALQNFSFKP 467          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP4AA_MOUSE (Cytochrome P450 4A10 OS=Mus musculus GN=Cyp4a10 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.215e-21
Identity = 55/185 (29.73%), Postives = 96/185 (51.89%), Query Frame = 2
Query:  170 QEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVEL-GGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAI 721
            ++K   D L +++ A   +  +++D D+  E  +F F G  TT++ ++W    LA HP  Q   REEV  + G     T D + ++   +M + E+LRLYPP+   +R     V    G  +P+G ++ + I  +HH+  +W      F+P+RF+     + +H   F+PF  G R C+G+  A+
Sbjct:  283 KKKRRLDFLDILLFARMENGDSMSDKDLRAEVDTFMFEGHDTTASGVSWIFYALATHPDHQQRCREEVQSLLGDGSSITWDHLDQIPYTTMCIKEALRLYPPVPGIVRELSTSVTFPDGRSLPKGVQVTLSIYGLHHNPKVW-PNPEVFDPSRFAPD---SPRHSHSFLPFSGGARNCIGKQFAM 463          
The following BLAST results are available for this feature:
BLAST of DY258778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CP4A2_RAT1.449e-2130.85Cytochrome P450 4A2 OS=Rattus norvegicus GN=Cyp4a2... [more]
CP17A_SQUAC1.449e-2127.49Steroid 17-alpha-hydroxylase/17,20 lyase OS=Squalu... [more]
CP4AP_PIG2.471e-2129.73Cytochrome P450 4A25 OS=Sus scrofa GN=CYP4A25 PE=2... [more]
CP4X1_HUMAN3.227e-2127.19Cytochrome P450 4X1 OS=Homo sapiens GN=CYP4X1 PE=2... [more]
CP4D2_DROME3.227e-2132.59Cytochrome P450 4d2 OS=Drosophila melanogaster GN=... [more]
CP4CA_MOUSE3.227e-2129.17Cytochrome P450 4A12A OS=Mus musculus GN=Cyp4a12a ... [more]
CP3AJ_CAPAE3.227e-2132.92Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus ... [more]
CP3AI_RAT3.227e-2131.84Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a... [more]
CP343_HUMAN3.227e-2130.00Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE... [more]
CP4AA_MOUSE4.215e-2129.73Cytochrome P450 4A10 OS=Mus musculus GN=Cyp4a10 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BG01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258778 ID=DY258778; Name=DY258778; organism=Citrus clementina; type=EST; length=1216bp
GTAAAGTCTTCATCCCTGGCTACAGATTTTTGCCGACAAAAAGGAACATA
AGCTCATGGAAACTTGACAAGCAGATCAAGAGATCACTAACGAAGTTGAT
CGAGAGAGAAAAGCGAATGGGAATAGCAAGAATAAGACGATGATGGCGAC
GGCGATGCCGCAGGAGGAACAAGAAAAGGGACCAAAAGATTTGTTAGGGC
TAATGATTCAAGCATCATCGAATTCCTCCTCCAACATAACAGATTATGAC
ATAATTGAAGAGTGCAAGAGCTTCTTCTTTGCTGGCAAACAGACCACATC
CAATCTGCTGACGTGGACAACCGTCCTTCTAGCTATGCACCCACACTGGC
AGGTGCTAGCACGTGAGGAGGTTCTAAGGGTGTGTGGATCACGTGACTTA
CCCACCAGAGATGATGTTGCAAAGCTTAAGACCCTAAGCATGATACTAAA
TGAATCCCTTCGATTGTATCCGCCAATAATCGCGACAATCAGACGGGCCA
AGGCCGACGTGGAGTTGGGTGGATACAAGATACCGCGTGGGACCGAGTTG
CTGATACCAATCCTGGCCGTTCATCACGACCAAGCAATTTGGGGGAGTGA
GGCAAACGATTTCAATCCAGCTAGATTCTCAGAGGGAGTGGCCCGGGCAG
CGAAGCATCCAGTGGGGTTCATACCATTCGGCCTTGGGGTCCGCACCTGC
GTTGGGCAAAATCTAGCCATCTTGCAAACAAGCTAGCCCTTGCCCATCTA
CTCCCACGCTTCTCATTTCGTTTGGCCCCCTCGTATCAACATGCCCCCAC
CGGCCCGGATGCTCCCATACCCACCATACGGTGCACCCATCATCCTTCAA
ATTTTGCAAAAAAAGTTAAGAATCCCCCCGTTGAATCCCAGCCCCTTCAT
CGATAATCCCCCCCCCCCCCCCCCCCCCCNTCNANGGAATAAAAATCCAC
TGACAGCGAGCAGTGCGCGTCTCTCGCGTTCCCAACAGCAAACCCGGGAC
CACAGCATCCTCTGAAACTCGAATAGAGCGCCGGAATATACCGAGGCCTC
TAATATGATCAGATCCCATTACCTCGGAAGCTGCAGACACGACCCATGAG
AATTTTGCGGTGCCCANCGTCCCGTTCCGTCTGTGCTGCCTGGCGATCGA
GAACACCTGCCCAACCGTCCTGCCCCTCGGCACTGCCCCTCCGCCCTCAG
CTCCTCCTTCATCGCC
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