DY258784

Overview
NameDY258784
Unique NameDY258784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1255
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258784 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.774e-14
Identity = 74/308 (24.03%), Postives = 123/308 (39.94%), Query Frame = 3
Query:    9 LLGEQTDIANRAGDISLWFI-GILYFFVFSLTIQKYLQAQLKNMIVGW----LSAVAFAVHVALSWIFVSKLNLGIPGAMSAMIIASWFIVIGQFVYL-FGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVIEXXXXXXXXXXXXXXXNGFQAVLSXXXXXXXXXXXXXYINIICYYFIXXXXXXXXXXXXXXXXKGIWTGRL 914
            L  +   ++    D ++ FI G+   F++SL + KYLQ    N  + W       V   V+   ++  VS LNLG+ G+  A  I+ +      F+++        TW+G+SS    D  P L L+I S +M+C+E+W   +   L G +    +++S  +I   + +  +M+  G   A  VRV   LG  D   AK S    +  T         +  + + +L ++FTS++EVI                     V                +N I YY +                 G+W G L
Sbjct:  168 LFRQDPAVSRLTQDYAMIFIPGLPAIFLYSL-LAKYLQ----NQGIVWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANTISQFVQAAFLFLHIVLKKLHLETWEGWSSQCLRDWGPFLSLAIPSMLMMCVEWWAYEIGSFLMGLL--GVVDLSGQAIIYEVATVVYMIPMGLGMAVCVRVGTALGAADTLQAKRSAVSGLLCTAGTSLVVGTLLGLLNSQLGYIFTSDEEVIALVNQVLPIYIVFQLVEAVCCVFGGVLRGTGKQAFGAIVNAIMYYIVGLPLGIVLTFVVGMRIMGLWLGML 468          
BLAST of DY258784 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.025e-14
Identity = 51/212 (24.06%), Postives = 111/212 (52.36%), Query Frame = 3
Query:   84 FVFSLTIQKYLQAQ---LKNMIVGWLSAVAFAVHVALSWIFVSKLNLGIPGAMSAMIIASWFIVIGQFVYLFGGW---CPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVI 701
            F++ L + KYLQ Q      ++ G+++ +  A+    ++I +  L LG+ G+  A  ++ +  +I  F+Y+   W     +TW G+S A F +    ++L+++S +M+C+E+W   + + LAG +    +++++ +I   +    +++  G   A  +RV + LG G+ + AK S  V +  T +      ++       +A++FTS+  ++
Sbjct:  183 FLYQL-LAKYLQNQGIIYPQVLTGFIANIFNAL---FNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIV--WRRLYADTWGGWSQACFEEWGAFIRLAVASMLMLCIEWWAFEISMFLAGVL--GMVDLAAQAIIYQVAIVVYLIPLGLCIAGSIRVGHGLGAGNTEQAKRSALVVLCMTELCALLSGILLATLKDVVAYIFTSDPNIV 386          
BLAST of DY258784 vs. ExPASy Swiss-Prot
Match: S47A2_HUMAN (Multidrug and toxin extrusion protein 2 OS=Homo sapiens GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.501e-13
Identity = 58/253 (22.92%), Postives = 99/253 (39.13%), Query Frame = 3
Query:  159 VAFAVHVALSWIFVSKLNLGIPGAMSAMIIASWFIVIGQFVYL-FGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVIEXXXXXXXXXXXXXXXNGFQAVLSXXXXXXXXXXXXXYINIICYYFIXXXXXXXXXXXXXXXXKGIWTGRL 914
            V   V+   ++  VS LNLG+ G+  A II+ +   +   +Y+        TW G+SS    D  P   L++ S +MIC+E+W   +   L G +  + +++S+ ++   + +  +M+  G      VRV   LG  D   AK S    + +   I      +  +   +L H+FT++++VI                     V                +N I YY I                 G+W G L
Sbjct:  225 VGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAGWSSQCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLMGLL--SVVDLSAQAVIYEVATVTYMIPLGLSIGVCVRVGMALGAADTVQAKRSAVSGVLSIVGISLVLGTLISILKNQLGHIFTNDEDVIALVSQVLPVYSVFHVFEAICCVYGGVLRGTGKQAFGAAVNAITYYIIGLPLGILLTFVVRMRIMGLWLGML 475          
BLAST of DY258784 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.451e-13
Identity = 70/318 (22.01%), Postives = 121/318 (38.05%), Query Frame = 3
Query:    9 LLGEQTDIANRAGDISLWFI-GILYFFVFSLTIQKYLQAQLKNMIVGWLSAVAFAVHVALSWIFVSKLNLGIPGAMSAMIIASWFIVIGQFVYL-FGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFM--------------LVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVIEXXXXXXXXXXXXXXXNGFQAVLSXXXXXXXXXXXXXYINIICYYFIXXXXXXXXXXXXXXXXKGIWTGRL 914
            L  +  +++    D  + FI G+   F+++L + KYLQ Q           V   V+   ++  VS LNLG+ G+  A II+ +   +   +Y+        TW G+SS    D  P   L++ S +MIC+E+W   +   L G +  + +++S+ ++   + +  +M              +  G      VRV   LG  D   AK S    + +   I      +  +   +L H+FT++++VI                     V                +N I YY I                 G+W G L
Sbjct:  139 LFRQDPEVSRLTQDYVMIFIPGLPVIFLYNL-LAKYLQNQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAGWSSQCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLMGLL--SVVDLSAQAVIYEVATVTYMRHSHHLAYTAHVARIPLGLSIGVCVRVGMALGAADTVQAKRSAVSGVLSIVGISLVLGTLISILKNQLGHIFTNDEDVIALVSQVLPVYSVFHVFEAICCVYGGVLRGTGKQAFGAAVNAITYYIIGLPLGILLTFVVRMRIMGLWLGML 453          
BLAST of DY258784 vs. ExPASy Swiss-Prot
Match: YAO6_SCHPO (Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe GN=SPAC11D3.06 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.405e-11
Identity = 66/305 (21.64%), Postives = 122/305 (40.00%), Query Frame = 3
Query:   69 GILYFFVFSLTIQKYLQAQLKNMIVGWLSAVAFAVHVALSWIFVSKLNLGIPGAMSAMIIASW--FIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVIEXXXXXXXXXXXXXXXNGFQAVLSXXXXXXXXXXXXXYINIICYYFIXXXXXXXXXXXXXXXXKGIWTGRLLGGNNAIPWAGVCPLEKPMGT 977
            G L +  F L ++K+LQ Q       ++  V   ++VAL+++ V    LG+ GA  A  ++ W  FI++ Q+     G     W G++     +  P +KLS+   VM+  E+W   ++ L+AG  K   + +++ S+ +        + FG    +  RV+  LG G    A  + KVA      +G    +  +        +FT++ +VI+               +     +               +NI  YY +                 G+W G+++    A+   G+  L+  M T
Sbjct:  137 GGLGYVCFEL-LKKFLQTQEITRAGSYILLVTSPLNVALNFLLVHYYGLGLKGAPLATGLSYWLSFILLTQYAKYVKG--AEAWNGWNKRCLENFGPFVKLSLLGIVMVGTEWWAFEIVALVAG--KLGAVPLAAQSVIMTTDQLLNTIPFGLGIITSNRVAYYLGAGLPDNASLTAKVAAIVGVAVGSVIMITMIAVRNIYGRIFTNDPDVIQLVALVMPLVAAFQISDSLNGTMGGALRGTGRQKVGAIVNITAYY-LFALPLGIYLAFHGKGLVGLWIGQVI----ALSIVGILELKIVMAT 431          
The following BLAST results are available for this feature:
BLAST of DY258784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
S47A2_RABIT1.774e-1424.03Multidrug and toxin extrusion protein 2 OS=Oryctol... [more]
S47A1_XENTR3.025e-1424.06Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A2_HUMAN1.501e-1322.92Multidrug and toxin extrusion protein 2 OS=Homo sa... [more]
S47A2_PONAB7.451e-1322.01Multidrug and toxin extrusion protein 2 OS=Pongo a... [more]
YAO6_SCHPO1.405e-1121.64Uncharacterized transporter C11D3.06 OS=Schizosacc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BG10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258784 ID=DY258784; Name=DY258784; organism=Citrus clementina; type=EST; length=1255bp
TTTTCAAACTGCTCGGAGAACAAACAGACATAGCAAACAGAGCCGGAGAC
ATCTCACTTTGGTTCATTGGCATTCTCTATTTCTTTGTCTTCAGCTTAAC
GATCCAAAAGTACTTGCAAGCACAGCTCAAGAACATGATCGTCGGATGGC
TTTCGGCTGTTGCATTTGCTGTTCATGTGGCCTTGTCATGGATCTTTGTG
AGCAAATTGAACTTGGGGATTCCTGGTGCAATGAGTGCAATGATAATCGC
AAGTTGGTTTATAGTAATTGGACAGTTTGTGTATCTCTTTGGCGGTTGGT
GTCCCAATACATGGAAAGGATTCAGTTCTGCAGCTTTTGCTGATTTGTAT
CCTGTTTTGAAGCTCTCAATATCCTCAGGTGTAATGATTTGCTTAGAGTT
TTGGTACAATGCTCTTCTAGTCCTATTAGCAGGATATATGAAAAATGCCA
CAATTGAGATTTCTTCCTTCTCCATTTGCCTCAATATCATATCTTGGGAA
TTTATGTTGGTCTTTGGCTTCCTAGCTGCCTCTGGCGTGCGGGTTTCAAA
TGAACTGGGGAGAGGAGATGCTAAAGCTGCGAAATTTTCTGTAAAAGTTG
CAATAGCTACCACAACTGTCATTGGATTTTTCTTTTCCTTAATCTGCTTA
GTCTTCAGCCGTAAGCTAGCACATTTGTTCACAAGTAATGATGAAGTAAT
AGAATCCGTCACAAGCCTCTCAGTGCTGCTTGCTTTCTCGGTTTTACTCA
ATGGCTTTCAGGCAGTACTCTCAGGGGTGGCAGTAGGTGCTGGCCGGCAG
GCTGTGGTTGCATATATTAACATCATTTGCTATTATTTCATTGGCTTACC
TGGTGGCGTTCTTCTTGGATATGTGGGCGATCTCCAAGTTAAAGGTATTT
GGACTGGAAGGCTGCTTGGGGGAAATAATGCCATCCCTTGGGCTGGGGTA
TGTCCCCTGGAAAAACCGATGGGAACATGAAGGGAAAAAAACCATCAAAC
CGACCCCATAAAGTGGCTCTTGGAACCCCTCTGAAAAAAAAATTCCAACG
GGCATTTAAACTCAACAAAGTTAAGGGGCCCAAAATTTGCTTTGAAAAAT
CCCCGGTATATCCCCAATCCTGCCCCGGTTTTTTTTTCCCCCGCCCAAAA
AAACCCCAAATACACCCCTTAAAAACCCCCAAAAAAAAAAAACCTCCCCA
AAAAAAAAAAAATTTTTTTTTTTTTTTTCTTTTTTTTTGTTCTTTCGGGG
GGTTG
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