DY258796

Overview
NameDY258796
Unique NameDY258796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EFG_PARD8 (Elongation factor G OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=fusA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.082e-13
Identity = 58/190 (30.53%), Postives = 89/190 (46.84%), Query Frame = 3
Query:   78 GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYA---SQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGL 638
            G    +D  KG     E   SV  GF+ A K G LA     G   +   V L   + H      +      I A   +   A P L+EP+  +E+  PE+++G +   LN++RG V E M+   T    +KA +P+ E+FG+ + LR  TSG+A     F H+  +SS      S A Q++ +++ R  L
Sbjct:  529 GTLQFIDEVKGGNIPKEFIPSVQKGFEKAMKNGVLA-----GYPLDKLKVTLIDGSFHPVDSDQLSFEIAAIQAFKNASAKAGPVLMEPIMQMEVVTPEESMGDVIGDLNKRRGQV-EGMETSRTGARIVKAKVPLAETFGYVTALRTITSGRATSSMQFSHYAQVSS------SIAKQVLTEVQGRVDL 706          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EFG_PORGI (Elongation factor G OS=Porphyromonas gingivalis GN=fusA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12
Identity = 55/187 (29.41%), Postives = 87/187 (46.52%), Query Frame = 3
Query:   78 GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGL 638
            G    VD  KG     E   S+  GFQ A K G LA   +  +   V D   H     +   ++   A +    +   A P L+EP+  +E+  PE+++G +   LN++RG V E M+   T    +KA +P+ E FG+ + LR  TSG+A     F H+  +      P + A Q++ + + R  L
Sbjct:  528 GELQFVDEVKGGNIPKEFIPSIQKGFQRAMKNGVLAGYPLDQLKVTVIDGSFHPVDSDQLSFEIC--ALQAFKNACEKAHPTLMEPIMKLEVVTPEESMGDVIGDLNKRRGQV-EGMESSRTGARIVKAKVPLAEMFGYVTALRTITSGRATSTMTFSHYSEV------PSTIAKQVLTEAQGRVDL 705          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EFG_PORG3 (Elongation factor G OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=fusA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12
Identity = 55/187 (29.41%), Postives = 87/187 (46.52%), Query Frame = 3
Query:   78 GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGL 638
            G    VD  KG     E   S+  GFQ A K G LA   +  +   V D   H     +   ++   A +    +   A P L+EP+  +E+  PE+++G +   LN++RG V E M+   T    +KA +P+ E FG+ + LR  TSG+A     F H+  +      P + A Q++ + + R  L
Sbjct:  528 GELQFVDEVKGGNIPKEFIPSIQKGFQRAMKNGVLAGYPLDQLKVTVIDGSFHPVDSDQLSFEIC--ALQAFKNACEKAHPTLMEPIMKLEVVTPEESMGDVIGDLNKRRGQV-EGMESSRTGARIVKAKVPLAEMFGYVTALRTITSGRATSTMTFSHYSEV------PSTIAKQVLTEAQGRVDL 705          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EFG_BACV8 (Elongation factor G OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=fusA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.996e-12
Identity = 55/170 (32.35%), Postives = 78/170 (45.88%), Query Frame = 3
Query:   72 TIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ---LTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSS 572
            T G    +D  KG     E   SV  GFQ A K G LA     G   +   VVL   + H      +      I A +     A P L EP+  +E+  PE+ +G +   LN++RG V E M+   +    +KA +P+ E FG+ + LR  TSG+A     +DH   +SS
Sbjct:  525 TQGGLQFIDEVKGGNVPKEFIPSVQKGFQTAMKNGVLA-----GYPLDSLKVVLKDGSFHPVDSDQLSFEICAIQAYKNACAKAGPVLTEPIMKLEVVTPEENMGDVIGDLNKRRGQV-EGMESSRSGARIVKAKVPLAEMFGYVTALRTITSGRATSSMTYDHHAQVSS 688          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EFG_SULDN (Elongation factor G OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=fusA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 48/162 (29.63%), Postives = 76/162 (46.91%), Query Frame = 3
Query:   96 DMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGIC----FEVCDVVLHADAIHRGGGQVIP---TARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWD 560
            D   G  + NEIK  V+      + E   AE    G+      E  D+ L+  + H      +     A          A+P +LEP+  VE++ PE  +G +   LN++RG V     R G  +  + A++P+ E FG+S+ LR+AT G+A     FDH++
Sbjct:  521 DAGTGFVFHNEIKGGVIPKEYIPAVEKGCAETMSNGVLAGYPMEDIDITLYDGSYHEVDSNEMAFKLAASMGFKEGCRKARPAILEPLMKVEVEVPEDYMGDVIGDLNRRRGQVTNMGDRSGNKI--VDAFVPLAEMFGYSTDLRSATQGRATYSMEFDHYE 680          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EFG_BACFR (Elongation factor G OS=Bacteroides fragilis GN=fusA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.336e-11
Identity = 52/167 (31.14%), Postives = 79/167 (47.31%), Query Frame = 3
Query:   72 TIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSS 572
            T G    VD  KG     E   SV  GFQ A K G LA   +  +   + D   H     +   ++   A +    +   A P L+EP+  +E+  PE+ +G +   LN++RG V E M+   +    +KA +P+ E FG+ + LR  TSG+A    V+ H   +SS
Sbjct:  525 TQGGLQFVDEVKGGNIPKEFIPSVQKGFQTAMKNGVLAGYPLDSLKVTLVDGSFHPVDSDQLSFEIC--AIQAYKNACAKAGPVLMEPIMKLEVVTPEENMGDVIGDLNKRRGQV-EGMESSRSGARIVKAMVPLAEMFGYVTALRTITSGRATSSMVYSHHAQVSS 688          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EFG_BACFN (Elongation factor G OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.336e-11
Identity = 52/167 (31.14%), Postives = 79/167 (47.31%), Query Frame = 3
Query:   72 TIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSS 572
            T G    VD  KG     E   SV  GFQ A K G LA   +  +   + D   H     +   ++   A +    +   A P L+EP+  +E+  PE+ +G +   LN++RG V E M+   +    +KA +P+ E FG+ + LR  TSG+A    V+ H   +SS
Sbjct:  525 TQGGLQFVDEVKGGNIPKEFIPSVQKGFQTAMKNGVLAGYPLDSLKVTLVDGSFHPVDSDQLSFEIC--AIQAYKNACAKAGPVLMEPIMKLEVVTPEENMGDVIGDLNKRRGQV-EGMESSRSGARIVKAMVPLAEMFGYVTALRTITSGRATSSMVYSHHAQVSS 688          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EFG_HELPY (Elongation factor G OS=Helicobacter pylori GN=fusA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11
Identity = 59/192 (30.73%), Postives = 89/192 (46.35%), Query Frame = 3
Query:  108 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKG 635
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P+VE FG+S+ LR+AT G+      FDH+  +      P + A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EFG_HELPS (Elongation factor G OS=Helicobacter pylori (strain Shi470) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11
Identity = 59/192 (30.73%), Postives = 89/192 (46.35%), Query Frame = 3
Query:  108 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKG 635
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P+VE FG+S+ LR+AT G+      FDH+  +      P + A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EFG_HELPJ (Elongation factor G OS=Helicobacter pylori J99 GN=fusA PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11
Identity = 59/192 (30.73%), Postives = 89/192 (46.35%), Query Frame = 3
Query:  108 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKG 635
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P+VE FG+S+ LR+AT G+      FDH+  +      P + A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
The following BLAST results are available for this feature:
BLAST of DY258796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
EFG_PARD87.082e-1330.53Elongation factor G OS=Parabacteroides distasonis ... [more]
EFG_PORGI3.515e-1229.41Elongation factor G OS=Porphyromonas gingivalis GN... [more]
EFG_PORG33.515e-1229.41Elongation factor G OS=Porphyromonas gingivalis (s... [more]
EFG_BACV85.996e-1232.35Elongation factor G OS=Bacteroides vulgatus (strai... [more]
EFG_SULDN7.830e-1229.63Elongation factor G OS=Sulfurimonas denitrificans ... [more]
EFG_BACFR1.336e-1131.14Elongation factor G OS=Bacteroides fragilis GN=fus... [more]
EFG_BACFN1.336e-1131.14Elongation factor G OS=Bacteroides fragilis (strai... [more]
EFG_HELPY1.744e-1130.73Elongation factor G OS=Helicobacter pylori GN=fusA... [more]
EFG_HELPS1.744e-1130.73Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELPJ1.744e-1130.73Elongation factor G OS=Helicobacter pylori J99 GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258796 ID=DY258796; Name=DY258796; organism=Citrus clementina; type=EST; length=835bp
CTAAGATTCTGTCTGAGGAATTTGGTTGGGACAAGGATCTTGCCAAGAAA
ATCTGGTGTTTTGGTCCTGAGACCATTGGTCCTAACATGGTTGTGGATAT
GTGCAAGGGAGTTCAGTACTTGAATGAAATTAAGGATTCAGTTGTTGCTG
GGTTCCAGTGGGCATCAAAGGAAGGTGCATTGGCTGAAGAAAACATGAGG
GGCATTTGCTTTGAAGTTTGTGATGTGGTTCTTCATGCCGATGCTATCCA
CAGAGGTGGTGGCCAGGTTATTCCAACTGCTAGAAGGGTCATTTATGCAT
CCCAGCTTACAGCCAAACCAAGGCTTCTTGAGCCTGTCTACTTGGTGGAA
ATCCAAGCTCCTGAACAGGCACTTGGTGGTATTTACAGTGTTCTTAACCA
GAAACGTGGTCACGTTTTTGAGGAGATGCAGAGACCTGGTACCCCACTTT
ATAACATCAAGGCATACCTCCCGGTCGTTGAGTCTTTTGGATTTTCCAGC
ACTTTGAGAGCTGCAACCTCTGGACAGGCATTCCCTCAATGTGTGTTTGA
TCACTGGGACATGATGTCATCTGATCCATTGGAGCCGGGATCCCAGGCTT
CACAACTTGTTTTGGATATTAGGAAGAGGAAGGGTTTGAAAGGACAGATG
ACCCCCCTCTCTGATTATGAAAACAAGCTGTAAGCGCTTTTGCCATTATC
GATTGCTGGCCACTAGATTCATTTTTTTGCTGCCTTTGGTTTTGGTCCGT
TTTTTCCTTTGAAGGAAACAAGGTTAACTTTTTTGAATTTTGTTTTGGGA
ACCTCTGTTTTTTTAAATTGGGACCTCTCTATTTC
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