DY258796

Overview
NameDY258796
Unique NameDY258796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EFG_GRAFK (Elongation factor G OS=Gramella forsetii (strain KT0803) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 51/158 (32.28%), Postives = 73/158 (46.20%), Query Frame = 3
Query:   93 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPR---LLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHW 557
            VD+ KG +   E   SV  GF+ A K G LA     G   +   V L   + H      +          +  AK     +LEP+  VE+  PE+ +G I   LN++RG V     R G  +  IKA +P+ E FG+ +TLR  +SG+A     F H+
Sbjct:  532 VDVIKGGRIPKEFVPSVEKGFKEAMKNGPLA-----GFTMDSLKVTLKDGSFHPVDSDQLSFELAAKMGYKDAAKKAGAVILEPIMKVEVVTPEENMGDIVGDLNRRRGQVNNMSDRSGAKV--IKAEVPLSEMFGYVTTLRTLSSGRATSTMEFSHY 682          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EFG2_SHESR (Elongation factor G 2 OS=Shewanella sp. (strain MR-7) GN=fusA2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 48/170 (28.24%), Postives = 82/170 (48.24%), Query Frame = 3
Query:  138 SVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKGQ 647
            +V  GF      G +A   +  + FE+ D   HA        ++   A+     S   AKP+LLEP+  V++ +PE  +G +   LN++RG + +++   G     +KA +P+ E FG+  TLR  TSG+      F H+         P S A ++V  +++RK  + +
Sbjct:  537 AVEKGFASMMNTGTIAGFPVLDVEFELTDGAYHAVDSSAIAFEI--AAKAAFRQSIAKAKPQLLEPIMKVDVFSPEDNVGDVIGDLNRRRGMIKDQV--AGVTGVRVKADVPLSEMFGYIGTLRTMTSGRGQFSMEFSHYSPC------PNSVADKVVEQVKERKAAEAK 696          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EFG1_BURPS (Elongation factor G 1 OS=Burkholderia pseudomallei GN=fusA1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 55/184 (29.89%), Postives = 86/184 (46.74%), Query Frame = 3
Query:  105 KGVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-----DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHV--FEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQL 608
            KG ++L+EIK  V+          G +   K G LA   +  +   +      DV  + +A    G      A R        AKP LLEP+  VE++ PE  +G +   L+ +RG V   E++   G  L  ++A +P+ E FG+S++LR+AT G+A     F H+    S+  E    A Q+
Sbjct:  527 KGYEFLDEIKGGVIPREFIPAVNKGIEETLKSGVLAGYPVVDVKVHLTFGSYHDVDSNENAFRMAGSMAFKEAMR-------RAKPVLLEPMMAVEVETPEDFMGNVMGDLSSRRGIVQGMEDIAGGGGKL--VRAEVPLAEMFGYSTSLRSATQGRATYTMEFKHYAETPSNVSEAVINAKQV 701          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EFG1_BURMA (Elongation factor G 1 OS=Burkholderia mallei GN=fusA1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 55/184 (29.89%), Postives = 86/184 (46.74%), Query Frame = 3
Query:  105 KGVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-----DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHV--FEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQL 608
            KG ++L+EIK  V+          G +   K G LA   +  +   +      DV  + +A    G      A R        AKP LLEP+  VE++ PE  +G +   L+ +RG V   E++   G  L  ++A +P+ E FG+S++LR+AT G+A     F H+    S+  E    A Q+
Sbjct:  527 KGYEFLDEIKGGVIPREFIPAVNKGIEETLKSGVLAGYPVVDVKVHLTFGSYHDVDSNENAFRMAGSMAFKEAMR-------RAKPVLLEPMMAVEVETPEDFMGNVMGDLSSRRGIVQGMEDIAGGGGKL--VRAEVPLAEMFGYSTSLRSATQGRATYTMEFKHYAETPSNVSEAVINAKQV 701          
The following BLAST results are available for this feature:
BLAST of DY258796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
EFG_GRAFK8.658e-1132.28Elongation factor G OS=Gramella forsetii (strain K... [more]
EFG2_SHESR8.658e-1128.24Elongation factor G 2 OS=Shewanella sp. (strain MR... [more]
EFG1_BURPS8.658e-1129.89Elongation factor G 1 OS=Burkholderia pseudomallei... [more]
EFG1_BURMA8.658e-1129.89Elongation factor G 1 OS=Burkholderia mallei GN=fu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258796 ID=DY258796; Name=DY258796; organism=Citrus clementina; type=EST; length=835bp
CTAAGATTCTGTCTGAGGAATTTGGTTGGGACAAGGATCTTGCCAAGAAA
ATCTGGTGTTTTGGTCCTGAGACCATTGGTCCTAACATGGTTGTGGATAT
GTGCAAGGGAGTTCAGTACTTGAATGAAATTAAGGATTCAGTTGTTGCTG
GGTTCCAGTGGGCATCAAAGGAAGGTGCATTGGCTGAAGAAAACATGAGG
GGCATTTGCTTTGAAGTTTGTGATGTGGTTCTTCATGCCGATGCTATCCA
CAGAGGTGGTGGCCAGGTTATTCCAACTGCTAGAAGGGTCATTTATGCAT
CCCAGCTTACAGCCAAACCAAGGCTTCTTGAGCCTGTCTACTTGGTGGAA
ATCCAAGCTCCTGAACAGGCACTTGGTGGTATTTACAGTGTTCTTAACCA
GAAACGTGGTCACGTTTTTGAGGAGATGCAGAGACCTGGTACCCCACTTT
ATAACATCAAGGCATACCTCCCGGTCGTTGAGTCTTTTGGATTTTCCAGC
ACTTTGAGAGCTGCAACCTCTGGACAGGCATTCCCTCAATGTGTGTTTGA
TCACTGGGACATGATGTCATCTGATCCATTGGAGCCGGGATCCCAGGCTT
CACAACTTGTTTTGGATATTAGGAAGAGGAAGGGTTTGAAAGGACAGATG
ACCCCCCTCTCTGATTATGAAAACAAGCTGTAAGCGCTTTTGCCATTATC
GATTGCTGGCCACTAGATTCATTTTTTTGCTGCCTTTGGTTTTGGTCCGT
TTTTTCCTTTGAAGGAAACAAGGTTAACTTTTTTGAATTTTGTTTTGGGA
ACCTCTGTTTTTTTAAATTGGGACCTCTCTATTTC
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