DY258796
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.560e-52 Identity = 97/223 (43.50%), Postives = 142/223 (63.68%), Query Frame = 3 Query: 18 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGL 638 ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P ++SFGF + LR T GQAF VF HW ++ DPL+ A + ++ R+RKGL Sbjct: 721 KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGL 943
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 2.037e-52 Identity = 97/223 (43.50%), Postives = 142/223 (63.68%), Query Frame = 3 Query: 18 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGL 638 ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P ++SFGF + LR T GQAF VF HW ++ DPL+ A + ++ R+RKGL Sbjct: 721 KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGL 943
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 2.037e-52 Identity = 97/223 (43.50%), Postives = 142/223 (63.68%), Query Frame = 3 Query: 18 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGL 638 ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P ++SFGF + LR T GQAF VF HW ++ DPL+ A + ++ R+RKGL Sbjct: 720 KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGL 942
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 2.037e-52 Identity = 97/223 (43.50%), Postives = 142/223 (63.68%), Query Frame = 3 Query: 18 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGL 638 ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P ++SFGF + LR T GQAF VF HW ++ DPL+ A + ++ R+RKGL Sbjct: 721 KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGL 943
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 2.037e-52 Identity = 97/223 (43.50%), Postives = 142/223 (63.68%), Query Frame = 3 Query: 18 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGL 638 ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ PG+PLY IKA++P ++SFGF + LR T GQAF VF HW ++ DPL+ A + ++ R+RKGL Sbjct: 721 KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGL 943
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 1.118e-50 Identity = 99/230 (43.04%), Postives = 145/230 (63.04%), Query Frame = 3 Query: 3 KILSEEFGWDKDLAKKIWCFGPETIGPNMV------VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQ------------ASQLVLDIRKRKGL 638 + + + WD ++ IW FGP+ G N++ D+ K V LN +K+ + GFQW ++EG L +E +R + F + DVVL + I+RGGGQ+IPTARRV Y+S LTA PRL+EPVY+VE+ AP +L IY +L ++RGHV +++ RPG+PLY ++A +PV++S GF + LR T GQA Q VFDHW ++ DPL+ + A ++ R+RKGL Sbjct: 729 EFFQKNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNV--LNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGL 956
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 3.373e-39 Identity = 86/222 (38.74%), Postives = 132/222 (59.46%), Query Frame = 3 Query: 3 KILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKGQMTPLSDY 668 KIL E+ GWD D A+ IW N++VD G+QYL EI+D +V GF+WA++ G LA+E MRG+ + D V+H D HRG Q++P + I+A+ L+A+P +LEP+ ++I+ +G + SVLN+ RG + + Q+ + ++A LPV+ESF S LRAA +G+ F F W M P S + +V +RK+KGLK ++ +D+ Sbjct: 525 KILREKAGWDADEARGIWAIDDRFF--NLIVDRTSGIQYLREIRDYIVQGFRWATEAGPLAQEPMRGLKVVLTDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTILEPLMKLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPM------PESILADMVKQLRKKKGLKEEIPKPTDF 736
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 5.754e-39 Identity = 88/222 (39.64%), Postives = 129/222 (58.11%), Query Frame = 3 Query: 3 KILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKGQMTPLSDY 668 K+L EE GW D A++IW N+ VD+ GVQ+L E+KD+++ GF+ A +EG LA E +RG+ + D ++H D HRG GQ+ P R IYA LTAKP LLEP+ ++I+AP + LG I +++ +KRG + + +Q+ + I A +PV E+F + LR AT+G+A F W + P S LV IR+RKGLK + D+ Sbjct: 523 KVLREEAGWPTDQARRIWAIDENI---NVFVDLTTGVQHLREVKDTIIQGFRLAMREGPLAMEPVRGVKVILHDAIIHEDPAHRGPGQIYPAVRNAIYAGMLTAKPTLLEPIQKLDIKAPMEYLGNITTIITKKRGKILQVLQQGA--VARIIAEIPVAETFDLAEQLRGATAGKAIWGQEFSRWAPV------PDSMLLDLVRKIRERKGLKPEPPRPEDF 733
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 5.754e-39 Identity = 86/222 (38.74%), Postives = 131/222 (59.01%), Query Frame = 3 Query: 3 KILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKGQMTPLSDY 668 KIL E+ GWD D A+ IW N++VD G+QYL EI+D +V GF+WA++ G LA+E +RG+ + D V+H D HRG Q++P + I+A+ L+AKP +LEP+ ++I+ +G + SVLN+ RG + + Q+ + ++A LPV+ESF S LRAA +G+ F F W + P S LV +RK+KGLK ++ +D+ Sbjct: 525 KILREKAGWDTDEARGIWAIDDRYF--NVIVDKTSGIQYLREIRDYIVQGFRWATEAGPLAQEPIRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAMLSAKPTVLEPLLRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPV------PESMLLDLVKQLRKKKGLKEEIPKPTDF 736
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.855e-38 Identity = 85/222 (38.29%), Postives = 127/222 (57.21%), Query Frame = 3 Query: 3 KILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKGQMTPLSDY 668 KIL E+ GWD D A+ IW N++VD G+QYL EI+D +V GF+W+ + G LA+E MRG+ + D V+H D HRG Q++P + I+A+ L+A+P LLEP+ ++I+ +G + SVLN+ RG + + Q+ ++A LPV+ESF S LRAA +G+ F F W P S V +RK+KGLK ++ +D+ Sbjct: 525 KILREKAGWDTDEARGIWAIDDRYF--NVIVDKTSGIQYLREIRDYIVQGFRWSMEAGPLAQEPMRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTLLEPLMRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQEYMAF--LRAELPVLESFNISDELRAAAAGKIFWSMQFARWAPF------PESMLGDFVKQLRKKKGLKEEIPKPTDF 736 The following BLAST results are available for this feature:
BLAST of DY258796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258796 ID=DY258796; Name=DY258796; organism=Citrus clementina; type=EST; length=835bpback to top |