DY258796

Overview
NameDY258796
Unique NameDY258796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EF2_THEON (Elongation factor 2 OS=Thermococcus onnurineus (strain NA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.621e-25
Identity = 73/208 (35.10%), Postives = 108/208 (51.92%), Query Frame = 3
Query:   18 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGSQASQLVLDIRKRKGL 638
            E G D ++AK I     +    N+ +D  KG+QYLNE+ D +V GF  A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   +NQ+RG +  +M++ G  +  I +  PV E FGF+  LR ATSG+A        W    +     P   A  ++  IR+RKGL
Sbjct:  524 ELGLDYEIAKGI----VDVYNGNIFLDNTKGIQYLNEVMDLLVDGFHQAMDEGPLAKEPVMKVMVRLHDAKIHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGSVSREINQRRGQLI-DMRQEGEVMI-IISEAPVAEMFGFAGALRGATSGKAL-------WSTEHAGFKRVPNELAVNIIRQIRQRKGL 718          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EF2_THESM (Elongation factor 2 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=fusA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.066e-25
Identity = 71/208 (34.13%), Postives = 107/208 (51.44%), Query Frame = 3
Query:   18 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGSQASQLVLDIRKRKGL 638
            E G D ++A+ I     +    NM +D  KG+QYLNE+ D +V GF  A  EG LA E +  +   + D  +H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   +NQ+RG +  +M++ G  +  I +  PV E FGF+  +R ATSG+A        W    +     P   A  ++  IR+RKGL
Sbjct:  524 ELGMDYEIARGI----VDIYNGNMFLDNTKGLQYLNEVMDLLVDGFHQAMDEGPLAREPVMKVIVRLVDAKIHEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVVINVPYEYMGSVSREMNQRRGQLI-DMRQEGEVMI-IISEAPVAEMFGFAGAIRGATSGRAL-------WSTEHAGFKRVPTELAINIIRQIRQRKGL 718          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 8.066e-25
Identity = 71/213 (33.33%), Postives = 117/213 (54.93%), Query Frame = 3
Query:   15 EEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGSQASQLVLDIRKRKGLKGQM 650
            +E G DK+ ++ +       IG N+ +D  KG+Q+LNE  + VV G   + ++G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFSS +R+AT G+A        W+  ++   +   +   +++++IR+RKG+K ++
Sbjct:  522 QEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG-DLMVVEGIAPVDEMIGFSSDIRSATEGRA-------SWNTENAGFRVMADNLQREIIMEIRERKGMKTEL 721          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.066e-25
Identity = 71/213 (33.33%), Postives = 117/213 (54.93%), Query Frame = 3
Query:   15 EEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGSQASQLVLDIRKRKGLKGQM 650
            +E G DK+ ++ +       IG N+ +D  KG+Q+LNE  + VV G   + ++G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFSS +R+AT G+A        W+  ++   +   +   +++++IR+RKG+K ++
Sbjct:  522 QEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG-DLMVVEGIAPVDEMIGFSSDIRSATEGRA-------SWNTENAGFRVMADNLQREIIMEIRERKGMKTEL 721          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EF2_THEVO (Elongation factor 2 OS=Thermoplasma volcanium GN=fusA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.053e-24
Identity = 71/207 (34.30%), Postives = 111/207 (53.62%), Query Frame = 3
Query:   24 GWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLE-PGSQASQLVLDIRKRKGLK 641
            G D++ A+ + C      G N++ D+ +G+QYL+E  + ++  F      G LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   AK  LLEPV  V I  P++ +G   + + Q+RG V E+M + G  + ++ A +PV   FGF+S +R+AT G+         W   ++   + P      +V  IR+RKGL+
Sbjct:  527 GIDREEARGLVCVE----GTNIMFDVTRGIQYLDETMELLIEAFTEVMNRGPLANEKVFGVKARLVDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAKRILLEPVQKVFINVPQEEMGSAINEVQQRRG-VIEDMTQEGEEV-SLVARIPVSGMFGFASAIRSATGGKVL-------WSFENAGYQKVPPELQDSVVRSIRERKGLR 720          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.347e-24
Identity = 69/208 (33.17%), Postives = 115/208 (55.29%), Query Frame = 3
Query:   18 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLK 641
            E G +++ AK++          N++++M +G+  L+E ++ ++ GF+ A K G LA E  +G+  ++ D V H DAIHRG  Q+IP  R  +  +   A   LLEP+  V I  P+  +G     L+ +RG +  +M++ G  +  IK+  PV E FGF+  +R AT G+      F  ++ + ++ L+P     Q+V +IR RKGLK
Sbjct:  530 EIGMNREEAKRVMTI----YEGNVLLNMTRGIVQLDEARELIIEGFKEAVKNGPLAAEKCQGVKVKLMDAVFHEDAIHRGPAQLIPAVRTGVRDAIAQANVGLLEPIQNVYISTPQDYMGDAMKELSNRRGQIL-DMEQEG-DMTTIKSKAPVSEMFGFAGAIRGATQGRCLWSIEFGGFEKVPTE-LQP-----QIVKEIRTRKGLK 725          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.003e-24
Identity = 76/284 (26.76%), Postives = 120/284 (42.25%), Query Frame = 3
Query:   33 KDLAKKIWCFGPETIGPNMVVDMCKGVQY----------------LNEIKDSVVAGFQWASKEGALAEENMRGICFEV---------------------------------------CDVVLHADAIHRG-----------GGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGSQASQLVLDIRKRKGL 638
            +++  +IW FGP   GPN++V+  +  Q                   ++ +S+V+GFQ A+  G + EE + G+CF +                                       C          +G            GQ+I T +     +      RL+  +Y  +I A    LG +Y+VL+++ G V +E  + GT ++ IKA LPV ESFGF+  +R  TSG A PQ VF HW+++ SDP                 +  +QA + +  +RKRKGL
Sbjct:  817 RNIVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPADKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQGASDLAKEGQEENETCSGGNENQELQDGCSEAFEKRTSQKGESPLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1100          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.288e-22
Identity = 65/185 (35.14%), Postives = 97/185 (52.43%), Query Frame = 3
Query:   84 NMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGL 638
            NM  DM +G+ ++ E+ D V+  F      G +A E   G+  ++ D  LH DAIHRG GQVIP  R  I  +   A   L EPV ++ +  P   +G + +++N +RG + +        L  IKA +PV E  GF+ TLR+ATSG+     V   ++ +      P     Q+V +IR+RKGL
Sbjct:  560 NMFFDMTRGIIHIGEVIDMVMDAFMQVMDHGPIAWEPCIGLIVKLTDAQLHEDAIHRGPGQVIPAVREAIKLAMKDAGLVLYEPVQVILVDVPPDYIGDVTALINSRRGAILDIQTEEDRAL--IKAKVPVREMIGFTDTLRSATSGRGVWYLVDQVYEPV------PRELFDQIVREIRQRKGL 736          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.391e-22
Identity = 65/197 (32.99%), Postives = 101/197 (51.27%), Query Frame = 3
Query:   48 KIWCFGPETIGPNMVVD-------MCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDV-VLHADAIHRG------------GGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 578
            K+  FGP  +G N+++        + +G     E  DS+  GFQ A  EG LA E ++G+C  V  V  +  D I                G++I + R  I+ + L   PR++  +Y  +IQ     LG +Y+V+ Q+ G +  E  + GTP + I+A++PVVE+FG S  +R  TSG A PQ VF  ++ +  DP
Sbjct:  859 KLAGFGPSRVGCNILLSQDNLLGSLFEGTPAAFEYSDSIKNGFQLAVSEGPLANEPVQGMCVLVESVHKMSQDEIESIEDPRYQQHIVDLSGRLITSTRDAIHEAFLDWSPRIMWAIYSCDIQTSVDVLGKVYAVILQRHGKIISEEMKEGTPFFQIEAHVPVVEAFGLSEDIRKRTSGAAQPQLVFSGFECIDLDP 1055          
BLAST of DY258796 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.969e-19
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 3
Query:  261 GQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGSQASQLVLDIRKRKGL 638
            GQ+I T +     +      RL+  +Y  +I A    LG +Y+VL+++ G V +E  + GT ++ IKA LPV ESFGF+  +R  TSG A PQ VF HW+++ SDP                 +  +QA + +  +RKRKGL
Sbjct:  966 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1107          
The following BLAST results are available for this feature:
BLAST of DY258796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
EF2_THEON3.621e-2535.10Elongation factor 2 OS=Thermococcus onnurineus (st... [more]
EF2_THESM8.066e-2534.13Elongation factor 2 OS=Thermococcus sibiricus (str... [more]
EF2_HALSA8.066e-2533.33Elongation factor 2 OS=Halobacterium salinarium GN... [more]
EF2_HALS38.066e-2533.33Elongation factor 2 OS=Halobacterium salinarum (st... [more]
EF2_THEVO1.053e-2434.30Elongation factor 2 OS=Thermoplasma volcanium GN=f... [more]
EF2_META32.347e-2433.17Elongation factor 2 OS=Methanococcus aeolicus (str... [more]
ETUD1_HUMAN4.003e-2426.76Elongation factor Tu GTP-binding domain-containing... [more]
EF2_NANEQ1.288e-2235.14Elongation factor 2 OS=Nanoarchaeum equitans GN=fu... [more]
RIA1_YEAST6.391e-2232.99Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]
ETUD1_MOUSE2.969e-1936.62Elongation factor Tu GTP-binding domain-containing... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3CA08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258796 ID=DY258796; Name=DY258796; organism=Citrus clementina; type=EST; length=835bp
CTAAGATTCTGTCTGAGGAATTTGGTTGGGACAAGGATCTTGCCAAGAAA
ATCTGGTGTTTTGGTCCTGAGACCATTGGTCCTAACATGGTTGTGGATAT
GTGCAAGGGAGTTCAGTACTTGAATGAAATTAAGGATTCAGTTGTTGCTG
GGTTCCAGTGGGCATCAAAGGAAGGTGCATTGGCTGAAGAAAACATGAGG
GGCATTTGCTTTGAAGTTTGTGATGTGGTTCTTCATGCCGATGCTATCCA
CAGAGGTGGTGGCCAGGTTATTCCAACTGCTAGAAGGGTCATTTATGCAT
CCCAGCTTACAGCCAAACCAAGGCTTCTTGAGCCTGTCTACTTGGTGGAA
ATCCAAGCTCCTGAACAGGCACTTGGTGGTATTTACAGTGTTCTTAACCA
GAAACGTGGTCACGTTTTTGAGGAGATGCAGAGACCTGGTACCCCACTTT
ATAACATCAAGGCATACCTCCCGGTCGTTGAGTCTTTTGGATTTTCCAGC
ACTTTGAGAGCTGCAACCTCTGGACAGGCATTCCCTCAATGTGTGTTTGA
TCACTGGGACATGATGTCATCTGATCCATTGGAGCCGGGATCCCAGGCTT
CACAACTTGTTTTGGATATTAGGAAGAGGAAGGGTTTGAAAGGACAGATG
ACCCCCCTCTCTGATTATGAAAACAAGCTGTAAGCGCTTTTGCCATTATC
GATTGCTGGCCACTAGATTCATTTTTTTGCTGCCTTTGGTTTTGGTCCGT
TTTTTCCTTTGAAGGAAACAAGGTTAACTTTTTTGAATTTTGTTTTGGGA
ACCTCTGTTTTTTTAAATTGGGACCTCTCTATTTC
back to top