DY258800

Overview
NameDY258800
Unique NameDY258800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1044
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: PUB2_SCHPO (E3 ubiquitin-protein ligase pub2 OS=Schizosaccharomyces pombe GN=pub2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.086e-14
Identity = 55/190 (28.95%), Postives = 88/190 (46.32%), Query Frame = 1
Query:    4 NVDINNLEE--YISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFD--HGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            N+ +NN  +  Y+  + +  + T    Q  A + G N++   + LQIF  +ELD LL G+R++     + +  +F     YT     ++   E++ E++P+++    QF TG  RLP  G   +         H S  P      T         LP   TC N L +PPY++KE + +KL  AI E  G
Sbjct:  494 NIAVNNQNKMNYLKALTEHKLVTSTEEQFNALKGGLNELIPDSVLQIFNENELDTLLNGKRDI----DVQDWKRFTDYRSYTETDDIVIWFWELLSEWSPEKKAKLLQFATGTSRLPLSGFKDM---------HGSDGPR---KFTIEKVGHISQLPKAHTCFNRLDIPPYNSKEELEQKLTIAIQETAG 667          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: UBE3B_HUMAN (Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 4.031e-14
Identity = 62/195 (31.79%), Postives = 88/195 (45.13%), Query Frame = 1
Query:   19 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMG-EFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTI----VRKHSSTAPNTASNGTG----PSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 576
            N   YI L+    + T I  Q  A  +GF  +     +++F+  EL  L+ G     +   L +H  +  G+      I+ L +I+  +FTPD++  F +FVT   R P  G A L P  +I    V     T     S   G            LP+  TC N LKLP YS K ++ +KL YAIS   G F+LS
Sbjct:  875 NKISYIHLMAHFRMHTQIKNQTAALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPDERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAISMNTG-FELS 1068          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: NEDD4_RAT (E3 ubiquitin-protein ligase NEDD4 OS=Rattus norvegicus GN=Nedd4 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.031e-14
Identity = 56/181 (30.94%), Postives = 85/181 (46.96%), Query Frame = 1
Query:   19 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            N +EYI LV+       I +QM AF+ GF ++     ++IF  +EL+ L+CG  ++ +     EH K+ +GY+     I    + +     +++    QFVTG  R+P  G A L         + S  P +    T       D LP   TC N L LPPY + + ++ KL  AI   QG
Sbjct:  715 NKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDV-DVNDWREHTKYKNGYSLNHQVIHWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAEL---------YGSNGPQSF---TVEQWGTPDKLPRAHTCFNRLDLPPYESFDELWDKLQMAIENTQG 882          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: UBE3B_MOUSE (Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.173e-13
Identity = 61/195 (31.28%), Postives = 88/195 (45.13%), Query Frame = 1
Query:   19 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMG-EFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTI----VRKHSSTAPNTASNGTG----PSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 576
            N   YI L+    + T I  Q  A  +GF  +     +++F+  EL  L+ G     +   L +H  +  G+      I+ L +I+  +FTP+++  F +FVT   R P  G A L P  +I    V     T     S   G            LP+  TC N LKLP YS K ++ +KL YAIS   G F+LS
Sbjct:  877 NKISYIHLMAHFRMHTQIKNQTAALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPEERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAISMNTG-FELS 1070          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.173e-13
Identity = 53/185 (28.65%), Postives = 94/185 (50.81%), Query Frame = 1
Query:   16 NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVF-DITSLQIFTPHELDHLLCGRREL--WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            +N  E++   V+  ++  I  Q   F +GF +VF +  S+++F   EL+ L+CG  E   ++  +L    K+  G++  S A+    EI+  +    Q+   QFVT + R+P  G++ +  K++++  H S                 DDLP   TC N + L  YS+K+ +  KL++AI+E +G
Sbjct:  721 SNKHEFVMKWVEFYLEKSIEPQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQTKFDFKSLRSVTKYVGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTASDRIPATGISTIPFKISLLGSHDS-----------------DDLPLAHTCFNEICLWNYSSKKKLELKLLWAINESEG 888          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: HACE1_XENLA (E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevis GN=hace1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.532e-13
Identity = 52/186 (27.96%), Postives = 88/186 (47.31%), Query Frame = 1
Query:   19 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 576
            N  EY+ LV +  +   I  Q+  F  GF+     + +Q+F  +EL+ LL G  E+ +     ++ ++  GY      I    E++ E T +++    QFVTG+ R+P GG A +     +     +    TA+            LP+  TC N LKLP Y +KEI+  +L+ A+  G   + ++
Sbjct:  771 NKAEYVQLVTELRMTRAIQPQINGFLQGFHMFIPPSLIQLFDEYELELLLSGMPEI-DVNDWMKNTEYTSGYERDDQVIQWFWEVVQELTQEERVLLLQFVTGSSRVPHGGFAYIMGGSGLQNFTIAAVAYTANL-----------LPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYTMA 944          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: HACE1_XENTR (E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropicalis GN=hace1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.820e-13
Identity = 51/186 (27.42%), Postives = 87/186 (46.77%), Query Frame = 1
Query:   19 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 576
            N  EY+ LV +  +   I  Q+  F  GF+     + +Q+F  +EL+ LL G  E+ +     ++ ++  GY      I    E++ E T +++    QFVTG+ R+P GG A +     +     +    T +            LP+  TC N LKLP Y +KEI+  +L+ A+  G   + ++
Sbjct:  739 NKAEYVQLVTELRMTRAIQPQINGFLQGFHMFIPPSLIQLFDEYELELLLSGMPEI-DVNDWMKNTEYTSGYERDDQVIQWFWEVVQELTQEERVLLLQFVTGSSRVPHGGFAYIMGGSGLQNFTIAAVAYTPNL-----------LPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYTMA 912          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 9.928e-13
Identity = 56/184 (30.43%), Postives = 84/184 (45.65%), Query Frame = 1
Query:   28 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLN----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSF 567
            EY+ LV    +   I  Q+ AF  GFN++     + IF   EL+ L+ G  E+ +   L  + ++   YTA SP I    E++  F+ +    F QFVTG  ++P  G   L     P+   + K               +  A + LPS  TC N L LP Y +KE + ++L+ AI E    F
Sbjct: 3512 EYVDLVAGHILTNAIRPQINAFLEGFNELIPRELVSIFNDKELELLISGLPEI-DFDDLKANTEYT-SYTAGSPVIHWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHK---------------AYGAPERLPSAHTCFNQLDLPEYQSKEQLQERLLLAIHEASEGF 3678          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: UBE3B_XENTR (Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.297e-12
Identity = 61/195 (31.28%), Postives = 89/195 (45.64%), Query Frame = 1
Query:   19 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMG-EFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTI----VRKHSSTAPNTASNGTG----PSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 576
            N   YI L+    + T I  Q  AF +GF  +     +++F+  EL  L+ G     +   L +H  +  G+      I+ L +I+  +F+ +++  F +FVT   R P  G A L P  +I    V     T     S   G      +     LP+  TC N LKLP YS K I+ +KL YAIS   G F+LS
Sbjct:  879 NKISYIHLMAHFRMHTQIKNQTVAFISGFRSIIRPEWIRMFSAPELQRLISGDNAEIDLDDLKKHTVYYGGFHGSHRVIIWLWDILANDFSSEEKAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKKEPGGRLPTSSTCFNLLKLPNYSKKGILREKLRYAISMNTG-FELS 1072          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: HERC4_HUMAN (Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.297e-12
Identity = 54/185 (29.19%), Postives = 88/185 (47.57%), Query Frame = 1
Query:    7 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            V+  N +E++   VD      +    +AF AGF++V     L +F P+EL  ++ G    ++   L ++ ++   Y A+ P I    E+  E   ++++ F  F+TG+ R+P  G+  L  KL I            S G G     ++ LP   TC N L LP Y+ KE +  KL+ AI   +G
Sbjct:  888 VNKQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTN-YDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL--KLVI-----------QSTGGG-----EEYLPVSHTCFNLLDLPKYTEKETLRSKLIQAIDHNEG 1053          
The following BLAST results are available for this feature:
BLAST of DY258800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PUB2_SCHPO3.086e-1428.95E3 ubiquitin-protein ligase pub2 OS=Schizosaccharo... [more]
UBE3B_HUMAN4.031e-1431.79Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UB... [more]
NEDD4_RAT4.031e-1430.94E3 ubiquitin-protein ligase NEDD4 OS=Rattus norveg... [more]
UBE3B_MOUSE1.173e-1331.28Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ub... [more]
HUL4_YEAST1.173e-1328.65Probable E3 ubiquitin-protein ligase HUL4 OS=Sacch... [more]
HACE1_XENLA1.532e-1327.96E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevi... [more]
HACE1_XENTR5.820e-1327.42E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropi... [more]
UPL1_ARATH9.928e-1330.43E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
UBE3B_XENTR1.297e-1231.28Ubiquitin-protein ligase E3B OS=Xenopus tropicalis... [more]
HERC4_HUMAN1.297e-1229.19Probable E3 ubiquitin-protein ligase HERC4 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CB04FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258800 ID=DY258800; Name=DY258800; organism=Citrus clementina; type=EST; length=1044bp
GAAAATGTTGACATTAATAACTTGGAGGAATACATATCCTTGGTAGTTGA
TGCCACTGTCAAGACAGGCATCATGCGGCAAATGGAAGCTTTTAGAGCTG
GCTTCAATCAGGTCTTTGACATCACATCATTACAAATATTTACTCCTCAT
GAATTGGACCATCTGCTTTGTGGCCGTAGAGAGTTGTGGGAGCCTGCGGC
ACTTGCTGAGCATATAAAATTCGATCATGGATACACTGCCAAGAGTCCTG
CAATTGTTAACTTACTAGAGATCATGGGAGAATTCACACCAGATCAGCAG
CGTGCCTTCTGTCAGTTTGTTACTGGTGCACCTCGTCTTCCACCGGGTGG
GTTGGCGGTGCTGAATCCAAAGCTTACCATTGTCAGAAAGCATTCTTCAA
CTGCACCTAATACAGCATCAAACGGAACCGGGCCTTCGGAATCAGCGGAT
GACGACTTGCCAAGTGTCATGACTTGTGCCAATTACCTGAAGCTTCCTCC
TTACTCTACCAAGGAAATTATGTACAAGAAACTGGTTTATGCAATAAGCG
AAGGGCAGGGATCTTTTGATCTGTCATGAGTTCTCGAAACTAACCGATGG
ACCTTTGTATACTAATATTTGTGTCATCAAGTCAATTCTCTTACCTGGGG
ATTATTCATCTTTGAAAGTAGCATCATATTTCAGTCAAATAATGGCTGCT
TTTCACTGCCCTTGTATCAATGTTCACATCATTGGCAAGTTGATTTTTTT
TTTGTTTCAGGTCAGACTTCAGGCTGCCACAGTGCCCCACTCTCTCAACA
AAGATTTGAAGAGGGAAATTGTGGAGCAGTTTTTTGGCTGCTGCTAGGAC
TTTGGATATTAATAAGAAAACTTAAATTTTTTTTTTTGTCTTTTTTCCCC
TCATTGAACAATTTATTGCCTGCCGAAGTCCAACTAACCTTGTATGGCAT
AAAAATGAAGGGGAAGGAAAAAAAAAATTTGGTTAAATGGAATCCCCTTT
ATTTAAACCCCCAATTTCCTTTTCCATTTAAAATTCTTTTGAAT
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