DY258800

Overview
NameDY258800
Unique NameDY258800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1044
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: HERC4_RAT (Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.693e-12
Identity = 55/185 (29.73%), Postives = 87/185 (47.03%), Query Frame = 1
Query:    7 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            V+  N +E++   VD      +    +AF AGF++V     L +F P+EL  ++ G    ++   L ++ ++   Y A+ P I    E+  E   ++++ F  F+TG+ R+P  G+  L  KL I               TG  ES    LP   TC N L LP Y+ KE +  KL+ AI   +G
Sbjct:  888 VNKQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTN-YDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL--KLVI-------------QSTGGGESY---LPVSHTCFNLLDLPKYTEKETLRCKLIQAIDHNEG 1053          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: HERC4_MOUSE (Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.889e-12
Identity = 55/185 (29.73%), Postives = 86/185 (46.49%), Query Frame = 1
Query:    7 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            V+  N +E++   VD      +    +AF AGF++V     L +F P+EL  ++ G    ++   L ++ ++   Y A  P I    E+  E   ++++ F  F+TG+ R+P  G+  L  KL I               TG  ES    LP   TC N L LP Y+ KE +  KL+ AI   +G
Sbjct:  888 VNRQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTN-YDWKELEKNTEYKGEYWADHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL--KLVI-------------QSTGGGESY---LPVSHTCFNLLDLPKYTEKETLRCKLIQAIDHNEG 1053          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.927e-12
Identity = 55/185 (29.73%), Postives = 84/185 (45.41%), Query Frame = 1
Query:   28 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLN-----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSF 567
            EY+ LV D  + + I  Q+ AF  G N++     + IF   EL+ L+ G  E+ +   L  + ++   YT  SP I    E++  F+ +    F QFVTG  ++P  G   L       +L I + + S                 + LPS  TC N L LP Y +KE + ++L+ AI E    F
Sbjct: 3489 EYVDLVADHILTSAIRPQINAFLEGLNELIPRELVSIFNDKELELLISGLPEI-DFDDLKANTEYT-SYTVGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGSP----------------ERLPSAHTCFNQLDLPEYQSKEQVQERLLLAIHEANEGF 3655          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: K0317_HUMAN (Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 4.927e-12
Identity = 48/181 (26.52%), Postives = 81/181 (44.75%), Query Frame = 1
Query:   31 YISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDL 573
            Y++L+    + + +  ++E F  G N++     L IF  +EL+ L+CG  ++      A  +     +  +   +     ++   T ++     QF TG+ +LPPGG A L P   I+                P+ S    LP+  TC N L LP Y + E +++ L  AISEG   F +
Sbjct:  659 YLNLLAQYRLASQVKEEVEHFLKGLNELVPENLLAIFDENELELLMCGTGDISVSDFKAHAVVVGGSWHFREKVMRWFWTVVSSLTQEELARLLQFTTGSSQLPPGGFAALCPSFQII--------------AAPTHST---LPTAHTCFNQLCLPTYDSYEEVHRMLQLAISEGCEGFGM 822          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: K0317_MOUSE (Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 6.435e-12
Identity = 48/181 (26.52%), Postives = 81/181 (44.75%), Query Frame = 1
Query:   31 YISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDL 573
            Y++L+    + + +  ++E F  G N++     L IF  +EL+ L+CG  ++      A  +     +  +   +     ++   T ++     QF TG+ +LPPGG A L P   I+                P+ S    LP+  TC N L LP Y + E +++ L  AISEG   F +
Sbjct:  659 YLNLLAQYRLASQVKEEVEHFLKGLNELVPENLLAIFDENELELLMCGTGDINVSDFKAHAVVVGGSWHFREKVMRWFWAVVSSLTQEELARLLQFTTGSSQLPPGGFAALCPSFQII--------------AAPTHST---LPTAHTCFNQLCLPTYDSYEEVHRMLQLAISEGCEGFGM 822          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: HERC6_HUMAN (Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 6.435e-12
Identity = 54/185 (29.19%), Postives = 85/185 (45.95%), Query Frame = 1
Query:    7 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            VD  N  +Y+S  +D      +    E F+ GF +V +   L+ F P EL   + G  + ++     ++ K++ GY    P I    +   + T D+++ F  F+TG  RL   G+     K+ IV +     P T S         + D P+ +TC N L LP YST E M + L  AI+  +G
Sbjct:  847 VDQTNKRDYVSKYIDYIFNVSVKAVYEEFQRGFYRVCEKEILRHFYPEELMTAIIGNTD-YDWKQFEQNSKYEQGYQKSHPTIQLFWKAFHKLTLDEKKKFLFFLTGRDRLHARGIQ----KMEIVFR----CPETFS---------ERDHPTSITCHNILSLPKYSTMERMEEALQVAINNNRG 1013          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: HERC3_HUMAN (Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.435e-12
Identity = 55/190 (28.95%), Postives = 89/190 (46.84%), Query Frame = 1
Query:    1 ENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL-WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            +NV +  +N +E++   V+   +  +     AF +GF +V     L++F P EL  ++ G     WE   L E   +   Y+A  P +    E   EF  ++++ F  F+TG+ R+P  G+A L   +       STA            S ++ LP   TC N L LP YS+KEI+  +L  A+   +G
Sbjct:  877 DNVTVCKDNRQEFVDAYVNYVFQISVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEE--LEETAIYKGDYSATHPTVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIVI------QSTA------------SGEEYLPVAHTCYNLLDLPKYSSKEILSARLTQALDNYEG 1046          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: UBE3C_HUMAN (Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.434e-11
Identity = 55/182 (30.22%), Postives = 78/182 (42.86%), Query Frame = 1
Query:   31 YISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 576
            YI LV D  +   I +   AFR G   V  +  L++F   E+  L+ G +       L     +  GY+A  P I     ++  FT +++R   +FVT   R P  G   L P   I             NG    E     LP+  TC N LKLP +  + ++  KL+YAI E    F+LS
Sbjct:  919 YIHLVADYRLNRQIRQHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPISLEDLKSFTNYSGGYSADHPVIKVFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCI------------HNGGSDLER----LPTASTCMNLLKLPEFYDETLLRSKLLYAI-ECAAGFELS 1083          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: TOM1_NEUCR (E3 ubiquitin-protein ligase TOM1-like OS=Neurospora crassa GN=B11B22.010 PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.872e-11
Identity = 53/187 (28.34%), Postives = 83/187 (44.39%), Query Frame = 1
Query:   19 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSF 567
            N  EY+ L+V+  + T +  QM+AF  GF+++     + IF   EL+ L+ G  ++    W+  A  E+    H Y+A +P I      +  F  ++     QFVTG  ++P  G   L     + R +                 + D LPS  TC N L LP Y   E +  +L+ AI+ G   F
Sbjct: 3854 NKHEYVRLIVEHKLITSVKDQMKAFLTGFHEIIPEELIAIFNEQELELLISGLPDIDIDDWK--ANTEY----HNYSAGAPQIQWFWRAVRSFDKEELAKLLQFVTGTSKVPLNGFKELEGMNGVSRFNIHR-----------DYGSKDRLPSSHTCFNQLDLPEYENYETLRSQLLKAITAGSDYF 4023          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: NEDD4_DROME (E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila melanogaster GN=Nedd4 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.445e-11
Identity = 53/192 (27.60%), Postives = 83/192 (43.23%), Query Frame = 1
Query:    4 NVDINN--LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL----NPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            N+D+ N   +EYI LV++      +  QM +F  GF  +  +  ++IF  HEL+ L+CG + + +     E+  +   Y      I      +  F+ + +    QFVTG  R+P  G   L     P++  + K  +  PN              + P   TC N L LPPY     +  KL+ AI   QG
Sbjct:  828 NIDVTNENKDEYIKLVIEWRFVARVKEQMSSFLDGFGSIIPLNLIKIFDEHELELLMCGIQNI-DVKDWRENTLYKGDYHMNHIIIQWFWRAVLSFSNEMRSRLLQFVTGTSRVPMNGFKELYGSNGPQMFTIEKWGT--PN--------------NFPRAHTCFNRLDLPPYEGYLQLKDKLIKAIEGSQG 1002          
The following BLAST results are available for this feature:
BLAST of DY258800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
HERC4_RAT1.693e-1229.73Probable E3 ubiquitin-protein ligase HERC4 OS=Ratt... [more]
HERC4_MOUSE2.889e-1229.73Probable E3 ubiquitin-protein ligase HERC4 OS=Mus ... [more]
UPL2_ARATH4.927e-1229.73E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
K0317_HUMAN4.927e-1226.52Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 ... [more]
K0317_MOUSE6.435e-1226.52Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 ... [more]
HERC6_HUMAN6.435e-1229.19Probable E3 ubiquitin-protein ligase HERC6 OS=Homo... [more]
HERC3_HUMAN6.435e-1228.95Probable E3 ubiquitin-protein ligase HERC3 OS=Homo... [more]
UBE3C_HUMAN1.434e-1130.22Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UB... [more]
TOM1_NEUCR1.872e-1128.34E3 ubiquitin-protein ligase TOM1-like OS=Neurospor... [more]
NEDD4_DROME2.445e-1127.60E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila m... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CB04FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258800 ID=DY258800; Name=DY258800; organism=Citrus clementina; type=EST; length=1044bp
GAAAATGTTGACATTAATAACTTGGAGGAATACATATCCTTGGTAGTTGA
TGCCACTGTCAAGACAGGCATCATGCGGCAAATGGAAGCTTTTAGAGCTG
GCTTCAATCAGGTCTTTGACATCACATCATTACAAATATTTACTCCTCAT
GAATTGGACCATCTGCTTTGTGGCCGTAGAGAGTTGTGGGAGCCTGCGGC
ACTTGCTGAGCATATAAAATTCGATCATGGATACACTGCCAAGAGTCCTG
CAATTGTTAACTTACTAGAGATCATGGGAGAATTCACACCAGATCAGCAG
CGTGCCTTCTGTCAGTTTGTTACTGGTGCACCTCGTCTTCCACCGGGTGG
GTTGGCGGTGCTGAATCCAAAGCTTACCATTGTCAGAAAGCATTCTTCAA
CTGCACCTAATACAGCATCAAACGGAACCGGGCCTTCGGAATCAGCGGAT
GACGACTTGCCAAGTGTCATGACTTGTGCCAATTACCTGAAGCTTCCTCC
TTACTCTACCAAGGAAATTATGTACAAGAAACTGGTTTATGCAATAAGCG
AAGGGCAGGGATCTTTTGATCTGTCATGAGTTCTCGAAACTAACCGATGG
ACCTTTGTATACTAATATTTGTGTCATCAAGTCAATTCTCTTACCTGGGG
ATTATTCATCTTTGAAAGTAGCATCATATTTCAGTCAAATAATGGCTGCT
TTTCACTGCCCTTGTATCAATGTTCACATCATTGGCAAGTTGATTTTTTT
TTTGTTTCAGGTCAGACTTCAGGCTGCCACAGTGCCCCACTCTCTCAACA
AAGATTTGAAGAGGGAAATTGTGGAGCAGTTTTTTGGCTGCTGCTAGGAC
TTTGGATATTAATAAGAAAACTTAAATTTTTTTTTTTGTCTTTTTTCCCC
TCATTGAACAATTTATTGCCTGCCGAAGTCCAACTAACCTTGTATGGCAT
AAAAATGAAGGGGAAGGAAAAAAAAAATTTGGTTAAATGGAATCCCCTTT
ATTTAAACCCCCAATTTCCTTTTCCATTTAAAATTCTTTTGAAT
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