DY258800

Overview
NameDY258800
Unique NameDY258800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1044
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: UBE3C_MOUSE (Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.194e-11
Identity = 55/182 (30.22%), Postives = 77/182 (42.31%), Query Frame = 1
Query:   31 YISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 576
            YI LV D  +   I     AFR G   V  +  L++F   E+  L+ G +       L     +  GY+A  P I     ++  FT +++R   +FVT   R P  G   L P   I             NG    E     LP+  TC N LKLP +  + ++  KL+YAI E    F+LS
Sbjct:  919 YIHLVADYRLNKQIRPHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPVSLEDLKSFTNYSGGYSADHPVIKIFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCI------------HNGGSDLER----LPTASTCMNLLKLPEFYDEALLRSKLLYAI-ECAAGFELS 1083          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: SMUF2_XENLA (E3 ubiquitin-protein ligase SMURF2 OS=Xenopus laevis GN=smurf2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.171e-11
Identity = 52/187 (27.81%), Postives = 83/187 (44.39%), Query Frame = 1
Query:   25 EEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLN----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            +EY+ L V+     GI  Q  A + GFN+V     L+ F   EL+ ++CG  ++    W+     +H       T  S  +    + +  F  +++    QFVTG+ R+P  G   L     P+L  + +  ++  N               LP   TC N + +PPY T E +Y+KL+ AI E  G
Sbjct:  582 KEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKAFDEKELELIICGLGKIDVSDWKSNTRLKHC------TTDSNIVKWFWKAVESFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDASTNN---------------LPKAHTCFNRIDIPPYETYEKLYEKLLTAIEETCG 747          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: SMUF2_HUMAN (E3 ubiquitin-protein ligase SMURF2 OS=Homo sapiens GN=SMURF2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.171e-11
Identity = 56/194 (28.87%), Postives = 88/194 (45.36%), Query Frame = 1
Query:    7 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRA-FCQFVTGAPRLPPGGLAVLN----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            V+  N +EY+ L V+     GI  Q  A + GFN+V     L+ F   EL+ ++CG  ++    W+     +H   D         IV       EF  +++RA   QFVTG+ R+P  G   L     P+L  + +                ++  ++LP   TC N + +PPY + E +Y+KL+ AI E  G
Sbjct:  573 VNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKHCTPDSN-------IVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQ---------------IDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCG 744          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: SMUF2_MOUSE (E3 ubiquitin-protein ligase SMURF2 OS=Mus musculus GN=Smurf2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.292e-11
Identity = 54/190 (28.42%), Postives = 86/190 (45.26%), Query Frame = 1
Query:   19 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRA-FCQFVTGAPRLPPGGLAVLN----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            N +EY+ L V+     GI  Q  A + GFN+V     L+ F   EL+ ++CG  ++    W+     +H   D         +V       EF  +++RA   QFVTG+ R+P  G   L     P+L  + +                ++  ++LP   TC N + +PPY + E +Y+KL+ AI E  G
Sbjct:  577 NKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVSDWKVNTRLKHCTPDSN-------VVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQ---------------IDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCG 744          
The following BLAST results are available for this feature:
BLAST of DY258800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
UBE3C_MOUSE3.194e-1130.22Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ub... [more]
SMUF2_XENLA4.171e-1127.81E3 ubiquitin-protein ligase SMURF2 OS=Xenopus laev... [more]
SMUF2_HUMAN4.171e-1128.87E3 ubiquitin-protein ligase SMURF2 OS=Homo sapiens... [more]
SMUF2_MOUSE9.292e-1128.42E3 ubiquitin-protein ligase SMURF2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CB04FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258800 ID=DY258800; Name=DY258800; organism=Citrus clementina; type=EST; length=1044bp
GAAAATGTTGACATTAATAACTTGGAGGAATACATATCCTTGGTAGTTGA
TGCCACTGTCAAGACAGGCATCATGCGGCAAATGGAAGCTTTTAGAGCTG
GCTTCAATCAGGTCTTTGACATCACATCATTACAAATATTTACTCCTCAT
GAATTGGACCATCTGCTTTGTGGCCGTAGAGAGTTGTGGGAGCCTGCGGC
ACTTGCTGAGCATATAAAATTCGATCATGGATACACTGCCAAGAGTCCTG
CAATTGTTAACTTACTAGAGATCATGGGAGAATTCACACCAGATCAGCAG
CGTGCCTTCTGTCAGTTTGTTACTGGTGCACCTCGTCTTCCACCGGGTGG
GTTGGCGGTGCTGAATCCAAAGCTTACCATTGTCAGAAAGCATTCTTCAA
CTGCACCTAATACAGCATCAAACGGAACCGGGCCTTCGGAATCAGCGGAT
GACGACTTGCCAAGTGTCATGACTTGTGCCAATTACCTGAAGCTTCCTCC
TTACTCTACCAAGGAAATTATGTACAAGAAACTGGTTTATGCAATAAGCG
AAGGGCAGGGATCTTTTGATCTGTCATGAGTTCTCGAAACTAACCGATGG
ACCTTTGTATACTAATATTTGTGTCATCAAGTCAATTCTCTTACCTGGGG
ATTATTCATCTTTGAAAGTAGCATCATATTTCAGTCAAATAATGGCTGCT
TTTCACTGCCCTTGTATCAATGTTCACATCATTGGCAAGTTGATTTTTTT
TTTGTTTCAGGTCAGACTTCAGGCTGCCACAGTGCCCCACTCTCTCAACA
AAGATTTGAAGAGGGAAATTGTGGAGCAGTTTTTTGGCTGCTGCTAGGAC
TTTGGATATTAATAAGAAAACTTAAATTTTTTTTTTTGTCTTTTTTCCCC
TCATTGAACAATTTATTGCCTGCCGAAGTCCAACTAACCTTGTATGGCAT
AAAAATGAAGGGGAAGGAAAAAAAAAATTTGGTTAAATGGAATCCCCTTT
ATTTAAACCCCCAATTTCCTTTTCCATTTAAAATTCTTTTGAAT
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