DY258802

Overview
NameDY258802
Unique NameDY258802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1243
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258802_ssr760 microsatellite DY258802_ssr760:760..771. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY258802 vs. ExPASy Swiss-Prot
Match: TCP19_ARATH (Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.617e-18
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1
Query:  217 KKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 375
            K+P SKDRH+KV+GRGRRIRMP  CAARVFQLTRELGHKSDG+TI WLL +AE
Sbjct:   53 KRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAE 105          
BLAST of DY258802 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSJ (Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.617e-18
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  202 GALTVKKPP--SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 375
            G   V+KPP  ++DRH+KV+GRGRRIRMP  CAAR+FQLTRELGHKSDG+TI WLL+Q+E
Sbjct:   64 GMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSE 123          
BLAST of DY258802 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSI (Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.617e-18
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  202 GALTVKKPP--SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 375
            G   V+KPP  ++DRH+KV+GRGRRIRMP  CAAR+FQLTRELGHKSDG+TI WLL+Q+E
Sbjct:   64 GMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSE 123          
BLAST of DY258802 vs. ExPASy Swiss-Prot
Match: PCF1_ORYSJ (Transcription factor PCF1 OS=Oryza sativa subsp. japonica GN=PCF1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.616e-18
Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 1
Query:  106 LPGAHMSNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 375
            +  A   +SDGAT          P+R +P        K P S DRHSKV GRGRR+R+P + AARVFQLTRELGH++DG+TIEWLLRQAE
Sbjct:   32 IAAAEPPSSDGAT----------PRRVRPR-------KSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAE 104          
BLAST of DY258802 vs. ExPASy Swiss-Prot
Match: TCP6_ARATH (Transcription factor TCP6 OS=Arabidopsis thaliana GN=TCP6 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.697e-17
Identity = 38/53 (71.70%), Postives = 49/53 (92.45%), Query Frame = 1
Query:  217 KKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 375
            KK P+KDRH KV+GRGRR+R+P +CAAR++QLT+ELGHKSDG+T+EWLL+ AE
Sbjct:   64 KKKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAE 116          
BLAST of DY258802 vs. ExPASy Swiss-Prot
Match: TCP11_ARATH (Transcription factor TCP11 OS=Arabidopsis thaliana GN=TCP11 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.881e-15
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:  196 GNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 375
            G G ++ +   +KDRH+KV+GR RR+ MP + AAR+FQLTRELGHK++G+TIEWLL QAE
Sbjct:   35 GGGCISAR---TKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAE 91          
The following BLAST results are available for this feature:
BLAST of DY258802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TCP19_ARATH2.617e-1881.13Transcription factor TCP19 OS=Arabidopsis thaliana... [more]
PCF2_ORYSJ2.617e-1871.67Transcription factor PCF2 OS=Oryza sativa subsp. j... [more]
PCF2_ORYSI2.617e-1871.67Transcription factor PCF2 OS=Oryza sativa subsp. i... [more]
PCF1_ORYSJ7.616e-1855.56Transcription factor PCF1 OS=Oryza sativa subsp. j... [more]
TCP6_ARATH1.697e-1771.70Transcription factor TCP6 OS=Arabidopsis thaliana ... [more]
TCP11_ARATH7.881e-1561.67Transcription factor TCP11 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CB07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258802 ID=DY258802; Name=DY258802; organism=Citrus clementina; type=EST; length=1243bp
CTCTCTCTAAACAAATCCAAACACATTAATCATTCACGCTCTTTCTCTCT
CTAACACTCTTTTAACTACTTCAACAAACCCTAAAGCTTTTATCTTCGCC
AAATTCTACCTGGTGCTCATATGTCTAATTCGGACGGTGCCACTAACGGC
GTCTCCAACGGCGCTATTATTGACCCCCAGAGACAGCAGCCTCCTGGTAA
TGGCGCGTTAACCGTCAAGAAGCCGCCCTCCAAGGACCGCCACAGCAAGG
TCGACGGCCGCGGCAGGAGAATCCGCATGCCGATCATTTGCGCAGCGCGT
GTTTTCCAGTTGACTCGCGAGCTCGGCCACAAATCCGACGGCCAGACCAT
CGAGTGGCTTCTCCGCCAAGCCGAGCCCTCAATCATTGCTGCCACGGGGA
CGGGTACCACTCCGGCTAGCTTCTCCACTGTCTCGGTGTCGGTTCGCGGC
GGAGGGAACTCGACTTCCTTGTCGTCGACGGTGTCTTCTTCGGCTATCTC
CGCTGCGTTGGAACATAAGCCCTCGCTGGGTCCCGCCCCGTTCATTCTTG
GAAAACGCGTGAGGTCCGACGATGATGGGACCAAAGGGGAAGATTCCATT
TCTGCCGTGGGTCCTGCCACGGTGGGGCCGATAGTGGGCCCTGCGACTCC
AGGTGGCGGGTTCTGGGCTTTGCCGGCCAGGCCGGATTTTGGGCAGGTCT
GGAGTTTCGCTGCAGCTGCCGCGCCGGAGATGGTGGTGCAGGCGGCTTCT
CAGCAACAGCATCATCATCATCAGCAGCCACACCAGTTGTTTATGCAGCA
AGCTATGGGAAAGGCATCGGCGGCTAAAGTGGGGGATTATCTCCCGGGTC
ATCTCCATTGGCTGGCTTCTTTATCGGGCGGGCCCGGGAATTCGGGTCCG
AAAGAGGAAGACCCCCGTTGAATTTCGGGTTTTGAAGGCTCCCTTGAAGG
GGTGGGGTGAAATAAAAAAATTAATTACAAATCCAAAATAAAATTATTAA
AAAATAAAGGGAGGGGGAAAAGGTTAAATGTTTGTGCCCTGGTGGGGGGG
GAGAAGAAAAAAAAAAAAAAAATTTTTTATATCAATGAAATATTTTTAGG
GGTAAGAGGGAGTTAAAAGGTTTTTGTGGGAAAAAAATATTAACGCAATC
TTTTTTCAACAACNCGCCCTCAAACCGTGCTGTGACGTCTGGTCTAATAG
CNAGAAAGTCAATTGGTCCCGCGCATCGGTTCAGAGGGCAATC
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