DY258810

Overview
NameDY258810
Unique NameDY258810
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1160
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258810_ssr1104 microsatellite DY258810_ssr1104:1104..1113. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1251 contig Ccv1_Contig1251:1..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_NUPAD (ATP synthase subunit alpha, chloroplastic OS=Nuphar advena GN=atpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.438e-12
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            D L IGQVRKFLV+LRTYL+TNKPQF+EIISSTK+FTE ++A+L+
Sbjct:  447 DQLEIGQVRKFLVQLRTYLRTNKPQFQEIISSTKVFTEQAEAILK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_CHLSC (ATP synthase subunit alpha, chloroplastic OS=Chloranthus spicatus GN=atpA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.715e-12
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL IGQV+KFLV+LRTYLKTNKPQF+EIISST+ FTE ++ALL+
Sbjct:  447 DSLEIGQVKKFLVQLRTYLKTNKPQFQEIISSTRTFTEQAEALLK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_SILLA (ATP synthase subunit alpha, chloroplastic OS=Silene latifolia GN=atpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.269e-11
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL IGQVRKF+VELRTYLKTNK QF+EIISSTK FTE ++ALL+
Sbjct:  447 DSLEIGQVRKFIVELRTYLKTNKSQFQEIISSTKTFTEEAEALLK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_PLAOC (ATP synthase subunit alpha, chloroplastic OS=Platanus occidentalis GN=atpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.269e-11
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL IGQV+KFLV+LRTYLKTNKPQF+EIISS+K FTE ++ALL+
Sbjct:  447 DSLEIGQVKKFLVQLRTYLKTNKPQFQEIISSSKTFTEEAEALLK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_PANGI (ATP synthase subunit alpha, chloroplastic OS=Panax ginseng GN=atpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.269e-11
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            D L IGQVRKFLVELRTYLKTNKP+F+EIISSTK FTE ++ALL+
Sbjct:  447 DLLEIGQVRKFLVELRTYLKTNKPKFQEIISSTKTFTEEAEALLK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_VITVI (ATP synthase subunit alpha, chloroplastic OS=Vitis vinifera GN=atpA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.827e-11
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL IGQVRKFL ELR YLKTNKPQF+EIISSTK FTE ++ LL+
Sbjct:  447 DSLEIGQVRKFLAELRNYLKTNKPQFQEIISSTKTFTEEAETLLK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_POPTR (ATP synthase subunit alpha, chloroplastic OS=Populus trichocarpa GN=atpA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.827e-11
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL IGQVRKFLVELRTYLKT+K QF+EIISSTK FTE ++ALL+
Sbjct:  447 DSLEIGQVRKFLVELRTYLKTSKTQFQEIISSTKTFTEEAEALLK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_POPAL (ATP synthase subunit alpha, chloroplastic OS=Populus alba GN=atpA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.827e-11
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL IGQVRKFLVELRTYLKT+K QF+EIISSTK FTE ++ALL+
Sbjct:  447 DSLEIGQVRKFLVELRTYLKTSKTQFQEIISSTKTFTEEAEALLK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_NANDO (ATP synthase subunit alpha, chloroplastic OS=Nandina domestica GN=atpA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.827e-11
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL IGQV+KFLVELRTYLKTNKPQF+EIISSTK  TE ++ LL+
Sbjct:  447 DSLEIGQVKKFLVELRTYLKTNKPQFQEIISSTKTLTEEAEVLLK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_NYMAL (ATP synthase subunit alpha, chloroplastic OS=Nymphaea alba GN=atpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.297e-11
Identity = 32/45 (71.11%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            D L IGQV+KF+V+LRT+L+TNKPQF+EIISSTK+FTE ++ALL+
Sbjct:  447 DQLEIGQVKKFIVQLRTHLRTNKPQFQEIISSTKVFTEQAEALLK 491          
The following BLAST results are available for this feature:
BLAST of DY258810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ATPA_NUPAD7.438e-1275.56ATP synthase subunit alpha, chloroplastic OS=Nupha... [more]
ATPA_CHLSC9.715e-1277.78ATP synthase subunit alpha, chloroplastic OS=Chlor... [more]
ATPA_SILLA1.269e-1180.00ATP synthase subunit alpha, chloroplastic OS=Silen... [more]
ATPA_PLAOC1.269e-1177.78ATP synthase subunit alpha, chloroplastic OS=Plata... [more]
ATPA_PANGI1.269e-1180.00ATP synthase subunit alpha, chloroplastic OS=Panax... [more]
ATPA_VITVI2.827e-1177.78ATP synthase subunit alpha, chloroplastic OS=Vitis... [more]
ATPA_POPTR2.827e-1180.00ATP synthase subunit alpha, chloroplastic OS=Popul... [more]
ATPA_POPAL2.827e-1180.00ATP synthase subunit alpha, chloroplastic OS=Popul... [more]
ATPA_NANDO2.827e-1177.78ATP synthase subunit alpha, chloroplastic OS=Nandi... [more]
ATPA_NYMAL6.297e-1171.11ATP synthase subunit alpha, chloroplastic OS=Nymph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258810 ID=DY258810; Name=DY258810; organism=Citrus clementina; type=EST; length=1160bp
TTGATTCATTATATATTGGTCAAGTAAGAAAATTTCTCGTTGAGCTACGT
ACTTACTTAAAAACGAATAAACCTCAGTTCCGAGAGATAATATCTTCTAC
CAAGATATTCACCGAATAATCAAAGGCGCTTTTGCGAGAGTCTATTCAGG
AACTCAAGGAAAGTTTGCTACTGAAAGAACAATTATAGATACCACATCAG
TCTTAGTCATACTTTATAATAGATAGGAATATAGACAAAAAAAAAGGGCC
TACCTCTGTTCCTGGTCCAAAGTGGGCTCCTTCACAGCGCAGTGCTGATC
GTGTTGTGGCATCGCCTCGGGCACAATCAGATCCAGTACAATGGATACTC
CTCTGCAAATTGCAAGCTGAACTACCAATGGCAAGGAGGCATTCCCTTCG
GCGATTTGTCGAGAAGCGACGTGACAGGCTGGTGAGCAAGAATCCATATC
CTGTTCAATCAAAGGCAAAAGCTTCTGACGCCAATGCTCAGACTCCTGCC
GAGGCAGGTTGCTTTGATAATACTTCCGTGCCTCAGGAAGAATTGCAACC
TACCGCTGCAGCCCATGTTGCATAAATTACCTATCATGCTTAGATGTTTG
TAGTAGATAATCCAGAACTATCTACTTAGATAAACTAGACATTGCTGTAT
TGTTTGTGGGGAAAAACCCAAGCGCACAGGGTGTGATGATGTTTGAATTG
CTTTTGGAATTTGGAGGAATGCCACGGGTTACACTTCTCATTGGCCGGTA
CCCAACAAAAAAAAAAAATTTCGTGTGTAGGGTGCTTCCACCCCGAGGAT
TGCACCTTTTAAATCGGCAATGAAGTAATTAGCTGAAATTTTTAGGCTTG
TCGAATACAACAACAATTGAAATGTCCGGGACCCAACTGGGAGCGTCAAA
TTGTAAGCAACTGATACTGCTGGGCACACCCGGCCGGGCACAAGCTAAAC
ATTCCACCCCTCTTTGGCACTTTGAACCAGCACCAAATTAACAGCAAAAG
ATGGAGCAAGCCATCGATATGCTCTGCCCACAGAAGCAAAAAACGAATTG
CAACTCTACTCAGATAACGGGATGGAAAGAAGAAGGGTGACTATCTCGGT
CGGGAGAGAGAGACAGAAATGCATCCCTCATCGGCCTCTCACGCCAATAG
GACTCCCCCC
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