DY258811

Overview
NameDY258811
Unique NameDY258811
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 3
Query:   15 VVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADS-FANFVWEPAVVKINAINAATEAACLILSVDETV 371
            +VAGGGA++ E++  LR+ +R++ GK Q  I  +A+ALE IP  L + AG +    L  LR KHA         GVD+  G IAD   A  V EP  VK   + +A EAA  IL +D+ +
Sbjct:  413 IVAGGGAVETELALRLREYARSVGGKEQLAIEKFAEALEEIPMILAETAGMEPIQTLMDLRAKHAKGLINA---GVDVMNGKIADDMLALNVLEPVRVKAQVLKSAVEAATAILKIDDLI 529          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 43/121 (35.54%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDE 365
            K   ++AGGGA ++E+S+ L  E+  ++G  QF    +A+ALEVIP  L +NAG ++ +V+  LR +HA   GE    G+ +   G ++++   V +P +V  +AI  A+E    IL +D+
Sbjct:  411 KEKALIAGGGAPEIEVSRVLMSEANKLSGVEQFVYQEFAQALEVIPTTLAENAGLNSINVVTDLRNRHA--NGE-KNAGISVRRSGASNTYDEHVLQPVLVSSSAITLASECVKSILRIDD 528          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPG_YEAST (T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae GN=CCT3 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = 3
Query:   24 GGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            GGGA +M +S  L ++++ + G  Q+   + A A+E IPR L  NAG D   +L++LR KHA         G+D + G I D  +  +WEP V+K  ++  A E+ACL+L VD+ V
Sbjct:  415 GGGATEMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHA---QGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIV 527          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 43/123 (34.96%), Postives = 72/123 (58.54%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K   ++AGGGA ++E++  L + SR + G   + + +Y+ ALEVIP  L +NAG +    + +LR +HA   G+    G+++  GGI++     V +P +V I+A+  ATE    IL +D+ V
Sbjct:  414 KKRALIAGGGAPEIELAVRLAEYSRTLGGMEAYCVRAYSDALEVIPSTLAENAGLNPISTVTELRNRHA--QGDKMA-GINVRKGGISNIMEELVVQPLLVSISALTLATETVRSILKIDDVV 533          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 43/123 (34.96%), Postives = 73/123 (59.35%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K   ++AGGGA ++E++  L + SR ++G   + I ++A A+EVIP  L +NAG +    + +LR +HA   GE    G+++  GGI++     V +P +V ++A+  ATE    IL +D+ V
Sbjct:  420 KKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHA--QGEKTT-GINVRKGGISNILEEQVVQPLLVSVSALTLATETVRSILKIDDVV 539          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 3
Query:   15 VVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            +V GGGA +M ++  L ++S+A+ G  Q+   + A+ALEVIPR L  N G     +L  LR KH   + E   +GV+  TG + D     +WEP  VK+     A E A L+L +D+ V   K
Sbjct:  407 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCE--TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 527          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   15 VVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            +V GGGA +M ++  L ++S+A+ G  Q+   + A+ALEVIPR L  N G     +L  LR KH     E   +GV+  TG + D     +WEP  VK+     A E A L+L +D+ V   K
Sbjct:  407 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCE--TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 527          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   15 VVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            +V GGGA +M ++  L ++S+A+ G  Q+   + A+ALEVIPR L  N G     +L  LR KH     E   +GV+  TG + D     +WEP  VK+     A E A L+L +D+ V   K
Sbjct:  407 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCE--TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 527          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   15 VVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            +V GGGA +M ++  L ++S+A+ G  Q+   + A+ALEVIPR L  N G     +L  LR KH     E   +GV+  TG + D     +WEP  VK+     A E A L+L +D+ V   K
Sbjct:  407 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCE--TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 527          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   15 VVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            +V GGGA +M ++  L ++S+A+ G  Q+   + A+ALEVIPR L  N G     +L  LR KH     E   +GV+  TG + D     +WEP  VK+     A E A L+L +D+ V   K
Sbjct:  407 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCE--TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 527          
The following BLAST results are available for this feature:
BLAST of DY258811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
THSA_SULTO2.716e-1540.83Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
TCPD_DEBHA2.716e-1535.54T-complex protein 1 subunit delta OS=Debaryomyces ... [more]
TCPG_YEAST3.547e-1538.79T-complex protein 1 subunit gamma OS=Saccharomyces... [more]
TCPD_TAKRU3.547e-1534.96T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_BOVIN3.547e-1534.96T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPG_MOUSE4.633e-1537.40T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPG_RAT6.051e-1537.40T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPG_PONAB6.051e-1537.40T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]
TCPG_HUMAN6.051e-1537.40T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPG_BOVIN6.051e-1537.40T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3CC08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258811 ID=DY258811; Name=DY258811; organism=Citrus clementina; type=EST; length=733bp
CGAAGAATTCCACTGTAGTTGCTGGTGGTGGTGCTATAGATATGGAGATA
AGTAAATACTTGAGGCAGGAATCCCGCGCAATAGCCGGGAAGTCTCAGTT
TTTTATCAACTCTTATGCAAAAGCTCTCGAGGTTATCCCACGCCAGTTGT
GTGACAATGCTGGATTTGATGCTACTGATGTGCTGAATAAATTAAGACAG
AAACATGCGCTTCCAACTGGTGAGGGTGCCCCTTATGGAGTGGATATCAA
CACTGGTGGAATTGCAGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAG
TTGTCAAGATCAATGCTATAAATGCTGCTACTGAGGCAGCATGCCTTATC
TTGAGTGTGGATGAGACAGTAAAGAACCCTAAGTCTGAAAGTGCACAAGG
TGAAGCTGCCGCGAGTGCCATGGGCGGCAGAGGGCGTGGTCGTGGGAGGG
GCATGCGCAGGCGATGAGCTTACGATATTTCAAGTCTTGAATGTCTTTTT
TGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTTCCTCATCTTTTGT
AGTCTCTCTATGTTGTGTTTCCAAGTGTAATTGAAAATTTAACAGACTGG
TGGTTACCCTCAGCCAGTTATGCCATTTGCGTTTGTTGTTGTTTGGTGAA
GGCAACGAGCCAACGAGACTATAGTTTTGTCCCATTGTGGAATTATGGCC
GTGGTTTTTATTATGTTAAATGGGGTTTTCTTC
back to top