DY258812

Overview
NameDY258812
Unique NameDY258812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13831 contig Ccv1_Contig13831:1450..2718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSB_AERPE (Thermosome subunit beta OS=Aeropyrum pernix GN=thsB PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 8.930e-22
Identity = 53/119 (44.54%), Postives = 79/119 (66.39%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            +VAGGGA++ E++K L + +  + GK+Q  + ++A+A+E +P+ L  NAG D  +VL KLR  H  P  E   YGVD++TG I D ++  V EP  VK+NA+ AATE A LIL +D+ +
Sbjct:  414 IVAGGGAVEAEVAKVLYEYASKLPGKTQLAVEAFARAVEALPQALAHNAGHDPIEVLVKLRSAHEKP--ENKWYGVDLDTGEIVDMWSRGVLEPMRVKLNALKAATEVASLILRIDDVI 530          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.873e-21
Identity = 56/123 (45.53%), Postives = 79/123 (64.23%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++   VAGGGA+++EI+K LR+ +  I GK Q  I +YA ALE +   L +N G+D  D+L KLR  H     +   YG+++ TG + D +   V EPAVVK+NAI AATEAA LIL +D+ +
Sbjct:  410 RDGRAVAGGGAVELEIAKRLRKYAPQIGGKEQLAIEAYASALENLVMILIENGGYDPIDLLVKLRSAHENEANKW--YGINVFTGQVEDMWKLGVIEPAVVKMNAIKAATEAATLILRIDDLI 530          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.289e-20
Identity = 52/127 (40.94%), Postives = 81/127 (63.78%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            ++  +VAGGGA ++E++  LR  +  ++G+ Q  + ++A ALEV+PR L +NAG DA ++L KLR KHA   G  A YG+++ TG + +   N V EP  VK  AI +ATEA  ++L +D+ +   K
Sbjct:  398 EDGKIVAGGGAAEIELAMKLRDYAEGVSGREQLAVRAFADALEVVPRTLAENAGLDAIEMLVKLRAKHA--EGNNAYYGLNVFTGDVENMTENGVVEPLRVKTQAIQSATEATEMLLRIDDVIAAEK 522          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.684e-20
Identity = 52/123 (42.28%), Postives = 79/123 (64.23%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            +VAGGGA ++E++K LR+ + ++AG+ Q  + ++A ALEVIPR L +N+G D  D+L KLR  H    GE   YG+D+  G + D     V EP  VK  AI++ATEA+ ++L +D+ +   K
Sbjct:  404 IVAGGGATEIELAKRLRKFAESVAGREQLAVKAFADALEVIPRTLAENSGLDPIDMLVKLRAAHEKEGGE--VYGLDVFEGEVVDMLEKGVVEPLKVKTQAIDSATEASVMLLRIDDVIAAEK 524          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.199e-20
Identity = 55/127 (43.31%), Postives = 81/127 (63.78%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            ++   +AGGGA++ EI+K LR+ +  + GK Q  I +YA ALE +   L +N GFD  ++L KLR  H   T +   +G+++ TG I D ++  V EPAVVK+NAI AATEA+ LIL +D+ +   K
Sbjct:  410 RDGRAIAGGGAVETEIAKRLRKYAPQVGGKEQLAIEAYANALESLVMILIENGGFDPIELLVKLRSAHENETNKW--HGINVYTGQIQDMWSLGVIEPAVVKMNAIKAATEASTLILRIDDLISAGK 534          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.417e-19
Identity = 54/126 (42.86%), Postives = 73/126 (57.94%), Query Frame = 3
Query:    6 NSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            N  LV GGGAI+ME++  L + S+ I G  Q+   + A ALEVIPR L  N G D   V+ +LR KHA    EG  +G+D NTG I D   + VW+P  VK   +  + EA C++L +D+ V   K
Sbjct:  406 NPKLVPGGGAIEMELACRLMEFSQKIEGMQQWPFKALAGALEVIPRTLAQNCGADVVRVMTELRAKHA-NDKEGLYWGIDGNTGKIRDMRESNVWDPISVKQQTLKTSIEATCMLLRIDDIVSGIK 530          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.576e-18
Identity = 53/123 (43.09%), Postives = 77/123 (62.60%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++   VAGGGA+++EI+K LR+ +  + GK Q  I +YA A+E +   L +NAG D  D L +LR  H   T +   YG+++ TG   D +   V EPA+VK+NAI AATEA  L+L +D+ V
Sbjct:  409 RDGRAVAGGGAVEIEIAKRLRKYAPQVGGKEQLAIEAYANAIEGLIMILAENAGLDPIDKLMQLRSLHENETNKW--YGLNLFTGNPEDMWKLGVIEPALVKMNAIKAATEAVTLVLRIDDIV 529          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.059e-18
Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++   VAGGGA+++EI+K LR+ +  + GK Q  I +YA A+E +   L +NAG D  D L +LR  H   T +   YG+++ TG   D +   V EPA+VK+NA+ AATEA  L+L +D+ V
Sbjct:  409 RDGRAVAGGGAVEIEIAKRLRKYAPQVGGKEQLAIEAYANAIEGLIMILAENAGLDPIDKLMQLRSLHENETNKW--YGLNLFTGNPEDMWKLGVIEPALVKMNAVKAATEAVTLVLRIDDIV 529          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.334e-17
Identity = 49/124 (39.52%), Postives = 77/124 (62.10%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++  +V G GA ++E+S  LR+ + ++ G+ Q  + ++A ALE+IPR L +NAG D  DVL +L+  H     +G  Y GVD++TG + D     V+EP  VK  AI +ATE A +IL +D+ +
Sbjct:  403 EDGKVVVGAGAPEIEVSLKLREWAPSLGGREQLAVEAFATALEIIPRTLAENAGLDPIDVLVELKAAHE----KGQKYAGVDVDTGKVVDMKERGVFEPLRVKTQAIGSATEVAVMILRIDDII 522          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.334e-17
Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            +VAGGGA ++EI++ LR+ +  I+G+ Q  ++++A ALE++P+ L +NAG D+ DVL  LR  H     E +PY G+D+  G I D     V EP  VK  AI +A EAA +IL +D+ +
Sbjct:  400 VVAGGGAPEVEIARKLREYADTISGREQLAVSAFADALEIVPKTLAENAGLDSIDVLVDLRAAH-----EESPYMGIDVFDGNIVDMKEAGVIEPQRVKKQAIQSAAEAAEMILRIDDMI 514          
The following BLAST results are available for this feature:
BLAST of DY258812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
THSB_AERPE8.930e-2244.54Thermosome subunit beta OS=Aeropyrum pernix GN=ths... [more]
THSB_SULTO9.873e-2145.53Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
THS_METTL1.289e-2040.94Thermosome subunit OS=Methanococcus thermolithotro... [more]
THS_METJA1.684e-2042.28Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THSB_SULAC2.199e-2043.31Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]
TCPG_OXYGR5.417e-1942.86T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
THSB_SULSH1.576e-1843.09Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]
THSB_SULSO2.059e-1842.28Thermosome subunit beta OS=Sulfolobus solfataricus... [more]
THSB_ARCFU1.334e-1739.52Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]
THSA_METTH1.334e-1742.50Thermosome subunit alpha OS=Methanobacterium therm... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258812 ID=DY258812; Name=DY258812; organism=Citrus clementina; type=EST; length=1269bp
CGAAGAATTCCACTTTAGTTGCTGGTGGTGGTGCTATAGATATGGAGATA
AGTAAATACTTGAGGCAGGAATCCCGCGCAATAGCCGGGAAGTCTCAGTT
TTTTATCAACTCTTATGCAAAAGCTCTCGAGGTTATCCCACGCCAGTTGT
GTGACAATGCTGGATTTGATGCTACTGATGTGCTGAATAAATTAAGACAG
AAACATGCGCTTCCAACTGGTGAGGGTGCCCCTTATGGAGTGGATATCAA
CACTGGTGGAATTGCAGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAG
TTGTCAAGATCAATGCTATAAATGCTGCTACTGAGGCAGCATGCCTTATC
TTGAGTGTGGATGAGACAGTAAAGAACCCTAAGTCTGAAAGTGCACAAGG
TGAAGCTGCCGCGAGTGCCATGGGCGGCAGAGGGCGTGGTCGTGGGAGGG
GCATGCGCAGGCGATGAGCTTACGATATTTCAAGTCTTGAATGTCTTTTT
TGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTTCCTCATCTTTTGT
AGTCTCTCTATGTTGTGATTCCCAGTGTAAGTGAAAATTTAACAGACTGG
TGGTTACCCTCAGCCAGTTATGCCATTTGCGTTTGTTGTTGTTTGGTGAA
GGCAACGAGCCCACGAGACTATAGTTTTGTCCCATGGTGGAATTATGGCC
GTGGTTTTTATTATGGTAAATGGGGTTTTCTTCCAAAAAAAAAAAAAAAA
AAAAAACCCCATTTTCTAGTACCAGTTGGCATAAAAAAAAGGCCTTGGCT
ATCATTTTGTTGAAACGAAACGGCCCGTATCCGTCAAAGAAAAAATCTTT
ATTGGCCTCCCGCGGAAAATCCCCAAAATTGAGGGAAACAGGGGGGCACA
ATTCGGTTCCCGGGAACCCGGGCCCGGGGCGCAAAAATCCCCAAGGCGGC
ATGGACGGAAAAACCACTATGTCTCCGAGTTGGAAACAGCCTCTCAAGAT
CCAATTGTAACAGCCACGTTTTTTTCCATCAAGGGGTATACCATCTTTAC
CTATATTAAAAACCCCGGTTCTTTGACTAGTGGAGAAAAAAATCCCCCAA
GGGGCGAGTATCCCAGAAGAAGAGCCTCCACCCGTTCGTGATTGCCGTCC
ACCGGAGTGCCACGATATCCCGACCCCCCCATATCTTATAAATTACTCAT
TCTCTTGTCCAACACTCCCCCCCCCCCCATTACCACACCCAACGAAACAT
AAATCACCTACCCTACCCA
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