DY258812

Overview
NameDY258812
Unique NameDY258812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPZ_RABIT (T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 7.092e-11
Identity = 38/120 (31.67%), Postives = 69/120 (57.50%), Query Frame = 3 
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            +V G GA+++ +++ L +   ++ G++Q  + ++A AL +IP+ L  N+GFD  + L K+R +H   +  G   GVD+NTG    +    +W+   VK   +++ T  A  IL VDE ++
Sbjct:  407 VVPGAGAVEVAMAEALIKYKSSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKIRTEH---SESGQLVGVDLNTGEPMVAAEVGIWDNYCVKKQLLHSCTVIATNILLVDEIMR 523
The following BLAST results are available for this feature:
BLAST of DY258812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
TCPZ_RABIT7.092e-1131.67T-complex protein 1 subunit zeta OS=Oryctolagus cu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258812 ID=DY258812; Name=DY258812; organism=Citrus clementina; type=EST; length=1269bp
CGAAGAATTCCACTTTAGTTGCTGGTGGTGGTGCTATAGATATGGAGATA
AGTAAATACTTGAGGCAGGAATCCCGCGCAATAGCCGGGAAGTCTCAGTT
TTTTATCAACTCTTATGCAAAAGCTCTCGAGGTTATCCCACGCCAGTTGT
GTGACAATGCTGGATTTGATGCTACTGATGTGCTGAATAAATTAAGACAG
AAACATGCGCTTCCAACTGGTGAGGGTGCCCCTTATGGAGTGGATATCAA
CACTGGTGGAATTGCAGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAG
TTGTCAAGATCAATGCTATAAATGCTGCTACTGAGGCAGCATGCCTTATC
TTGAGTGTGGATGAGACAGTAAAGAACCCTAAGTCTGAAAGTGCACAAGG
TGAAGCTGCCGCGAGTGCCATGGGCGGCAGAGGGCGTGGTCGTGGGAGGG
GCATGCGCAGGCGATGAGCTTACGATATTTCAAGTCTTGAATGTCTTTTT
TGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTTCCTCATCTTTTGT
AGTCTCTCTATGTTGTGATTCCCAGTGTAAGTGAAAATTTAACAGACTGG
TGGTTACCCTCAGCCAGTTATGCCATTTGCGTTTGTTGTTGTTTGGTGAA
GGCAACGAGCCCACGAGACTATAGTTTTGTCCCATGGTGGAATTATGGCC
GTGGTTTTTATTATGGTAAATGGGGTTTTCTTCCAAAAAAAAAAAAAAAA
AAAAAACCCCATTTTCTAGTACCAGTTGGCATAAAAAAAAGGCCTTGGCT
ATCATTTTGTTGAAACGAAACGGCCCGTATCCGTCAAAGAAAAAATCTTT
ATTGGCCTCCCGCGGAAAATCCCCAAAATTGAGGGAAACAGGGGGGCACA
ATTCGGTTCCCGGGAACCCGGGCCCGGGGCGCAAAAATCCCCAAGGCGGC
ATGGACGGAAAAACCACTATGTCTCCGAGTTGGAAACAGCCTCTCAAGAT
CCAATTGTAACAGCCACGTTTTTTTCCATCAAGGGGTATACCATCTTTAC
CTATATTAAAAACCCCGGTTCTTTGACTAGTGGAGAAAAAAATCCCCCAA
GGGGCGAGTATCCCAGAAGAAGAGCCTCCACCCGTTCGTGATTGCCGTCC
ACCGGAGTGCCACGATATCCCGACCCCCCCATATCTTATAAATTACTCAT
TCTCTTGTCCAACACTCCCCCCCCCCCCATTACCACACCCAACGAAACAT
AAATCACCTACCCTACCCA
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