DY258812

Overview
NameDY258812
Unique NameDY258812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.276e-17
Identity = 52/123 (42.28%), Postives = 71/123 (57.72%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++    AGGGA   EI+  LR  ++ I G+ Q  I  +A A+E IPR L +NAG D  D+L KLR +HA        YG+++ TG I D   N V EP  V   AI +ATEAA +IL +D+ +
Sbjct:  401 EDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHA---KGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 520          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.882e-17
Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++  +VAGGGA ++E+++ LR  +  + G+ Q  + ++A ALE+IPR L +N+G D  DVL +LR KH    G+    G+D+  G + D     V EP  VK  A+ +ATEAA +IL +D+ +
Sbjct:  405 EDGKVVAGGGAPEVEVARQLRDFADGVEGREQLAVEAFADALEIIPRTLAENSGLDPIDVLVQLRAKH--EDGQ-VTAGIDVYDGDVKDMLEEGVVEPLRVKTQALASATEAAEMILRIDDVI 524          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.882e-17
Identity = 51/127 (40.16%), Postives = 70/127 (55.12%), Query Frame = 3
Query:    6 NSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            N  LV GGGAI+ME+S +L + S +I G  Q    + A ALE IP+ L  N G D    + +LR KH     EG  + G++ N+G I D     VWEP  VK+     A E+AC++L +D+ V   K
Sbjct:  407 NPKLVPGGGAIEMEVSSHLEKISSSIEGLHQLPFRAVAYALEAIPKTLAQNCGVDVVRNITELRAKH---NQEGNKFIGIEGNSGKITDMGEANVWEPIAVKLQVYKTAIESACMLLRIDDVVSGLK 530          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.071e-17
Identity = 49/123 (39.84%), Postives = 77/123 (62.60%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++  +VAGGGA ++EI+K L+  + +I+G+ Q  ++++A+ALE++P+ L +NAG D+ DVL  LR  H     E    G+D+  G I D     V EP  VK  AI +A EAA +IL +D+ +
Sbjct:  396 EDGKVVAGGGAPEIEIAKRLKDYADSISGREQLAVSAFAEALEIVPKTLAENAGLDSIDVLVDLRAAHE----ESTYMGIDVFDGKIVDMKEAGVIEPHRVKKQAIQSAAEAAEMILRIDDVI 514          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.071e-17
Identity = 50/120 (41.67%), Postives = 71/120 (59.17%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGA-PYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            L  GGGA +M +S  L +++R+I G +Q+   + A A+E+IPR L  N G +    L +LR KHA    EG   +G+D  TG + D     VWEP  VK+ +I  A E+ACL+L VD+ V
Sbjct:  405 LSPGGGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKHA----EGQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIV 520          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.130e-16
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEG-APYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++  +VAGGGA ++E++  +R  +  + G+ Q    ++A ALEVIPR L +N+G D  D+L +LR+ H     EG   YGVD+ +G +A      V EP  VK  AI +ATE A +IL +D+ +
Sbjct:  403 ESGKVVAGGGAPEIEVALKIRDWAPTLGGREQLAAEAFASALEVIPRALAENSGLDPIDILVELRKAHE----EGKTTYGVDVFSGEVACMKERGVLEPLKVKTQAITSATEVAIMILRIDDVI 522          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.516e-16
Identity = 48/127 (37.80%), Postives = 75/127 (59.06%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            ++  ++AGGGA ++E+S  L + ++ + GK Q  I ++A+AL+VIPR L +NAG D  + L K+   H     +G   G+D+  G  AD     V EP  VK  AI +A+EAA +IL +D+ +   K
Sbjct:  403 EDGKIIAGGGAAEIELSIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAH---KEKGPTIGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIAAQK 526          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.287e-16
Identity = 48/127 (37.80%), Postives = 75/127 (59.06%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            ++  ++AGGGA ++E+S  L + ++ + GK Q  I ++A+AL+VIPR L +NAG D  + L K+   H     +G   G+D+  G  AD     V EP  VK  AI +A+EAA +IL +D+ +   K
Sbjct:  403 EDGKIIAGGGASEIELSIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAH---KEKGQTIGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.287e-16
Identity = 44/120 (36.67%), Postives = 72/120 (60.00%), Query Frame = 3
Query:   24 GGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            GGGA++ E++  L + + ++ G+ Q  I ++AKALE+IPR L +NAG D  + L KL+ +H          GVD++  G+ D  A  V +P  VK +A+ +A E A +IL +D+ + + K
Sbjct:  407 GGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKAEHEKGR---ISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKK 523          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.287e-16
Identity = 49/123 (39.84%), Postives = 75/123 (60.98%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++  ++ GGGA + E+S  LR+ + ++ G+ Q  + ++A+AL++IPR L +NAG D  D L  LR +H    GE A  G+D  TG + D     V EP  VK  AI +ATEAA +IL +D+ +
Sbjct:  401 EDGKVLPGGGAPETELSLQLREFADSVGGREQLAVEAFAEALDIIPRTLAENAGLDPIDSLVDLRSRH--DGGEFAA-GLDAYTGEVIDMEEEGVVEPLRVKTQAIESATEAAVMILRIDDVI 520          
The following BLAST results are available for this feature:
BLAST of DY258812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
THSB_THEAC2.276e-1742.28Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
THS_METKA3.882e-1739.02Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]
TCPG_TETPY3.882e-1740.16T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]
THSB_METTH5.071e-1739.84Thermosome subunit beta OS=Methanobacterium thermo... [more]
TCPG_SCHPO5.071e-1741.67T-complex protein 1 subunit gamma OS=Schizosacchar... [more]
THSA_ARCFU1.130e-1639.52Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]
THS_PYRAB2.516e-1637.80Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THS_PYRHO3.287e-1637.80Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THSA_THEAC3.287e-1636.67Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
THS1_HALVO3.287e-1639.84Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258812 ID=DY258812; Name=DY258812; organism=Citrus clementina; type=EST; length=1269bp
CGAAGAATTCCACTTTAGTTGCTGGTGGTGGTGCTATAGATATGGAGATA
AGTAAATACTTGAGGCAGGAATCCCGCGCAATAGCCGGGAAGTCTCAGTT
TTTTATCAACTCTTATGCAAAAGCTCTCGAGGTTATCCCACGCCAGTTGT
GTGACAATGCTGGATTTGATGCTACTGATGTGCTGAATAAATTAAGACAG
AAACATGCGCTTCCAACTGGTGAGGGTGCCCCTTATGGAGTGGATATCAA
CACTGGTGGAATTGCAGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAG
TTGTCAAGATCAATGCTATAAATGCTGCTACTGAGGCAGCATGCCTTATC
TTGAGTGTGGATGAGACAGTAAAGAACCCTAAGTCTGAAAGTGCACAAGG
TGAAGCTGCCGCGAGTGCCATGGGCGGCAGAGGGCGTGGTCGTGGGAGGG
GCATGCGCAGGCGATGAGCTTACGATATTTCAAGTCTTGAATGTCTTTTT
TGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTTCCTCATCTTTTGT
AGTCTCTCTATGTTGTGATTCCCAGTGTAAGTGAAAATTTAACAGACTGG
TGGTTACCCTCAGCCAGTTATGCCATTTGCGTTTGTTGTTGTTTGGTGAA
GGCAACGAGCCCACGAGACTATAGTTTTGTCCCATGGTGGAATTATGGCC
GTGGTTTTTATTATGGTAAATGGGGTTTTCTTCCAAAAAAAAAAAAAAAA
AAAAAACCCCATTTTCTAGTACCAGTTGGCATAAAAAAAAGGCCTTGGCT
ATCATTTTGTTGAAACGAAACGGCCCGTATCCGTCAAAGAAAAAATCTTT
ATTGGCCTCCCGCGGAAAATCCCCAAAATTGAGGGAAACAGGGGGGCACA
ATTCGGTTCCCGGGAACCCGGGCCCGGGGCGCAAAAATCCCCAAGGCGGC
ATGGACGGAAAAACCACTATGTCTCCGAGTTGGAAACAGCCTCTCAAGAT
CCAATTGTAACAGCCACGTTTTTTTCCATCAAGGGGTATACCATCTTTAC
CTATATTAAAAACCCCGGTTCTTTGACTAGTGGAGAAAAAAATCCCCCAA
GGGGCGAGTATCCCAGAAGAAGAGCCTCCACCCGTTCGTGATTGCCGTCC
ACCGGAGTGCCACGATATCCCGACCCCCCCATATCTTATAAATTACTCAT
TCTCTTGTCCAACACTCCCCCCCCCCCCATTACCACACCCAACGAAACAT
AAATCACCTACCCTACCCA
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