DY258812

Overview
NameDY258812
Unique NameDY258812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPG_DICDI (T-complex protein 1 subunit gamma OS=Dictyostelium discoideum GN=cct3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.606e-16
Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVD 362
            LV GGGAI+M +S+ L ++S++I G  Q    + A++LE IP+ L  N G +   +L +LR KHA    E   YGVD + G I D     +W+   VK+  +  A E+AC +L VD
Sbjct:  406 LVPGGGAIEMALSQALSEKSKSIEGLHQLPYKALAQSLECIPKILAQNCGANTVKLLTELRAKHATNPTENYTYGVDGDNGTIVDMKQLGIWDTHSVKVQTLKTAIESACTMLRVD 521          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 9.563e-16
Identity = 47/121 (38.84%), Postives = 75/121 (61.98%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY-GVDINTGGIADSFANF-VWEPAVVKINAINAATEAACLILSVDETV 371
            +V GGGA+++E++  L++ +R + GK Q  I +YA+ALE IP  L ++AG DA + L KLR  H+    +G  + GV++  G I +      V+EP +VK   I +A+EAA  IL +D+ +
Sbjct:  409 IVGGGGAVEVELALKLKEFARTVGGKQQLAIEAYAEALETIPTVLAESAGMDALEALLKLRSLHS----QGYKFAGVNVLEGKIEEDMTKINVYEPVLVKKQVIKSASEAAISILKIDDVI 525          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.249e-15
Identity = 46/123 (37.40%), Postives = 71/123 (57.72%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++  ++ GGGA + E++  LR  + ++ G+ Q  + ++A ALEVIPR L +NAG D  D L  LR +H    G     G+D   G + D  +  + EP  VK  AI +ATEAA +IL +D+ +
Sbjct:  400 EDGQVMPGGGAPETELAMQLRDFADSVGGREQLAVEAFADALEVIPRTLAENAGHDPIDSLVDLRSQH---DGGDTEAGLDAYNGDVIDMESEGIVEPLRVKTQAIESATEAATMILRIDDVI 519          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.249e-15
Identity = 46/119 (38.66%), Postives = 76/119 (63.87%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++AGGGAI++E++  LR  + +++G+ Q  + +YA ALE++PR L +NAG D+ D L  LR  H    G+    G+++ TG + D+F   V E A  K  A+ +A+EAA L+L +D+ +
Sbjct:  408 VLAGGGAIEVELASRLRNYADSVSGREQLAVEAYADALELVPRVLAENAGLDSIDTLVDLRAAH--EDGQ-VRAGLNVFTGEVEDAFDAGVVETAHAKEQAVASASEAANLVLKIDDII 523          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.631e-15
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGA-PYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            LV GGGA +M ++  L ++S+ + G  Q+   + A+ALEVIPR L  N G     +L  LR KH   T EG   +GVD   G +AD     +WEP  VK+     A E A L+L +D+ V   K
Sbjct:  406 LVPGGGASEMSVAHILTEKSKTMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRILTSLRAKH---TQEGCQTWGVDGEAGVLADMKELGIWEPLAVKLQTYKTAVETAILLLRIDDIVSGHK 526          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.130e-15
Identity = 43/123 (34.96%), Postives = 73/123 (59.35%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K   L+AGGGA ++E++  L + SR ++G   + + ++A A+EVIP  L +NAG +    + +LR +HA   GE    G+++  GGI++     V +P +V ++A+  ATE    IL +D+ V
Sbjct:  417 KKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHA--QGEKTT-GINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVV 536          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.130e-15
Identity = 43/123 (34.96%), Postives = 73/123 (59.35%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K   L+AGGGA ++E++  L + SR ++G   + + ++A A+EVIP  L +NAG +    + +LR +HA   GE    G+++  GGI++     V +P +V ++A+  ATE    IL +D+ V
Sbjct:  417 KKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHA--QGEKTA-GINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVV 536          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.130e-15
Identity = 43/123 (34.96%), Postives = 73/123 (59.35%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K   L+AGGGA ++E++  L + SR ++G   + + ++A A+EVIP  L +NAG +    + +LR +HA   GE    G+++  GGI++     V +P +V ++A+  ATE    IL +D+ V
Sbjct:  417 KKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHA--QGEKTT-GINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVV 536          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 83.9593 bits (206), Expect = 2.130e-15
Identity = 43/123 (34.96%), Postives = 73/123 (59.35%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K   L+AGGGA ++E++  L + SR ++G   + + ++A A+EVIP  L +NAG +    + +LR +HA   GE    G+++  GGI++     V +P +V ++A+  ATE    IL +D+ V
Sbjct:  417 KKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHA--QGEKTA-GINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVV 536          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.782e-15
Identity = 44/121 (36.36%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDE 365
            K   L+AGGGA ++E+S+ L  E+  ++G  QF    +A+ALEVIP  L +NAG ++ +V+  LR +HA   GE    G+ +   G ++++   V +P +V  +AI  A+E    IL +D+
Sbjct:  411 KEKALIAGGGAPEIEVSRVLMSEANKLSGVEQFVYQEFAQALEVIPTTLAENAGLNSINVVTDLRNRHA--NGE-KNAGISVRRSGASNTYDEHVLQPVLVSSSAITLASECVKSILRIDD 528          
The following BLAST results are available for this feature:
BLAST of DY258812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
TCPG_DICDI5.606e-1639.66T-complex protein 1 subunit gamma OS=Dictyostelium... [more]
THSA_AERPE9.563e-1638.84Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
THSA_HALSA1.249e-1537.40Thermosome subunit alpha OS=Halobacterium salinari... [more]
THS2_HALVO1.249e-1538.66Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
TCPG_XENLA1.631e-1539.52T-complex protein 1 subunit gamma OS=Xenopus laevi... [more]
TCPD_RAT2.130e-1534.96T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_PONAB2.130e-1534.96T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_MOUSE2.130e-1534.96T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_HUMAN2.130e-1534.96T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPD_DEBHA2.782e-1536.36T-complex protein 1 subunit delta OS=Debaryomyces ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258812 ID=DY258812; Name=DY258812; organism=Citrus clementina; type=EST; length=1269bp
CGAAGAATTCCACTTTAGTTGCTGGTGGTGGTGCTATAGATATGGAGATA
AGTAAATACTTGAGGCAGGAATCCCGCGCAATAGCCGGGAAGTCTCAGTT
TTTTATCAACTCTTATGCAAAAGCTCTCGAGGTTATCCCACGCCAGTTGT
GTGACAATGCTGGATTTGATGCTACTGATGTGCTGAATAAATTAAGACAG
AAACATGCGCTTCCAACTGGTGAGGGTGCCCCTTATGGAGTGGATATCAA
CACTGGTGGAATTGCAGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAG
TTGTCAAGATCAATGCTATAAATGCTGCTACTGAGGCAGCATGCCTTATC
TTGAGTGTGGATGAGACAGTAAAGAACCCTAAGTCTGAAAGTGCACAAGG
TGAAGCTGCCGCGAGTGCCATGGGCGGCAGAGGGCGTGGTCGTGGGAGGG
GCATGCGCAGGCGATGAGCTTACGATATTTCAAGTCTTGAATGTCTTTTT
TGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTTCCTCATCTTTTGT
AGTCTCTCTATGTTGTGATTCCCAGTGTAAGTGAAAATTTAACAGACTGG
TGGTTACCCTCAGCCAGTTATGCCATTTGCGTTTGTTGTTGTTTGGTGAA
GGCAACGAGCCCACGAGACTATAGTTTTGTCCCATGGTGGAATTATGGCC
GTGGTTTTTATTATGGTAAATGGGGTTTTCTTCCAAAAAAAAAAAAAAAA
AAAAAACCCCATTTTCTAGTACCAGTTGGCATAAAAAAAAGGCCTTGGCT
ATCATTTTGTTGAAACGAAACGGCCCGTATCCGTCAAAGAAAAAATCTTT
ATTGGCCTCCCGCGGAAAATCCCCAAAATTGAGGGAAACAGGGGGGCACA
ATTCGGTTCCCGGGAACCCGGGCCCGGGGCGCAAAAATCCCCAAGGCGGC
ATGGACGGAAAAACCACTATGTCTCCGAGTTGGAAACAGCCTCTCAAGAT
CCAATTGTAACAGCCACGTTTTTTTCCATCAAGGGGTATACCATCTTTAC
CTATATTAAAAACCCCGGTTCTTTGACTAGTGGAGAAAAAAATCCCCCAA
GGGGCGAGTATCCCAGAAGAAGAGCCTCCACCCGTTCGTGATTGCCGTCC
ACCGGAGTGCCACGATATCCCGACCCCCCCATATCTTATAAATTACTCAT
TCTCTTGTCCAACACTCCCCCCCCCCCCATTACCACACCCAACGAAACAT
AAATCACCTACCCTACCCA
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