DY258812

Overview
NameDY258812
Unique NameDY258812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 3.634e-15
Identity = 41/119 (34.45%), Postives = 74/119 (62.18%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++ GGGA ++E++  LR  + +++G+ Q  + ++A +LE++PR L +NAG D+ D L  LR  H     +    G+++ +G + D+F   V EPA  K  A+ +A+EAA L+L +D+ +
Sbjct:  409 VLPGGGATEVEVASRLRDFADSVSGREQLAVEAFADSLELVPRVLAENAGLDSIDTLVDLRSAH--ENDDDEHIGLNVLSGDLEDTFEAGVVEPAHAKEQAVTSASEAANLVLKIDDII 525          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.634e-15
Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K   L+AGGGA ++E++  L + SR + G   + + +Y+ ALEVIP  L +NAG +    + +LR +HA   G+    G+++  GGI++     V +P +V I+A+  ATE    IL +D+ V
Sbjct:  414 KKRALIAGGGAPEIELAVRLAEYSRTLGGMEAYCVRAYSDALEVIPSTLAENAGLNPISTVTELRNRHA--QGDKMA-GINVRKGGISNIMEELVVQPLLVSISALTLATETVRSILKIDDVV 533          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 3.634e-15
Identity = 44/123 (35.77%), Postives = 73/123 (59.35%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K   L+AGGGA ++E++  L + SR ++G   + I ++A A+EVIP  L +NAG +    + +LR +HA   GE    G+++  GGI++     V +P +V ++A+  ATE    IL +D+ V
Sbjct:  420 KKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHA--QGEKTT-GINVRKGGISNILEEQVVQPLLVSVSALTLATETVRSILKIDDVV 539          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPG_YEAST (T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae GN=CCT3 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 4.746e-15
Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 3
Query:   12 TLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            +L  GGGA +M +S  L ++++ + G  Q+   + A A+E IPR L  NAG D   +L++LR KHA         G+D + G I D  +  +WEP V+K  ++  A E+ACL+L VD+ V
Sbjct:  411 SLSPGGGATEMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHA---QGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIV 527          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.746e-15
Identity = 47/123 (38.21%), Postives = 67/123 (54.47%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            LV GGGA +M ++  L ++S+A+ G  Q+   + A+ALEVIPR L  N G     +L  LR KH   + E   +GV+  TG + D     +WEP  VK+     A E A L+L +D+ V   K
Sbjct:  407 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCE--TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 527          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.198e-15
Identity = 47/123 (38.21%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            LV GGGA +M ++  L ++S+A+ G  Q+   + A+ALEVIPR L  N G     +L  LR KH     E   +GV+  TG + D     +WEP  VK+     A E A L+L +D+ V   K
Sbjct:  407 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCE--TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 527          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.198e-15
Identity = 47/123 (38.21%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            LV GGGA +M ++  L ++S+A+ G  Q+   + A+ALEVIPR L  N G     +L  LR KH     E   +GV+  TG + D     +WEP  VK+     A E A L+L +D+ V   K
Sbjct:  407 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCE--TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 527          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 82.4185 bits (202), Expect = 6.198e-15
Identity = 47/123 (38.21%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            LV GGGA +M ++  L ++S+A+ G  Q+   + A+ALEVIPR L  N G     +L  LR KH     E   +GV+  TG + D     +WEP  VK+     A E A L+L +D+ V   K
Sbjct:  407 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCE--TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 527          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.198e-15
Identity = 47/123 (38.21%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            LV GGGA +M ++  L ++S+A+ G  Q+   + A+ALEVIPR L  N G     +L  LR KH     E   +GV+  TG + D     +WEP  VK+     A E A L+L +D+ V   K
Sbjct:  407 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCE--TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 527          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 6.198e-15
Identity = 45/132 (34.09%), Postives = 78/132 (59.09%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA----LPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            ++  LVAGGGA++  +S +L   ++ ++ + Q  +  +A AL +IP+ L  NA  D+TD++ KLR  H+    +P  +   + G+D+  G I D+    + EPA+ K+ ++  ATEAA  IL +D+ +K  K
Sbjct:  407 ESKKLVAGGGAVETSLSLFLETYAQTLSSREQLAVAEFASALLIIPKVLASNAARDSTDLVTKLRAYHSKAQLIPQLQHLKWAGLDLEEGTIRDNKEAGILEPALSKVKSLKFATEAAITILRIDDLIKLDK 538          
The following BLAST results are available for this feature:
BLAST of DY258812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
THSB_HALSA3.634e-1534.45Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPD_TAKRU3.634e-1535.77T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_BOVIN3.634e-1535.77T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPG_YEAST4.746e-1538.33T-complex protein 1 subunit gamma OS=Saccharomyces... [more]
TCPG_MOUSE4.746e-1538.21T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPG_RAT6.198e-1538.21T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPG_PONAB6.198e-1538.21T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]
TCPG_HUMAN6.198e-1538.21T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPG_BOVIN6.198e-1538.21T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]
TCPA_CAEEL6.198e-1534.09T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258812 ID=DY258812; Name=DY258812; organism=Citrus clementina; type=EST; length=1269bp
CGAAGAATTCCACTTTAGTTGCTGGTGGTGGTGCTATAGATATGGAGATA
AGTAAATACTTGAGGCAGGAATCCCGCGCAATAGCCGGGAAGTCTCAGTT
TTTTATCAACTCTTATGCAAAAGCTCTCGAGGTTATCCCACGCCAGTTGT
GTGACAATGCTGGATTTGATGCTACTGATGTGCTGAATAAATTAAGACAG
AAACATGCGCTTCCAACTGGTGAGGGTGCCCCTTATGGAGTGGATATCAA
CACTGGTGGAATTGCAGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAG
TTGTCAAGATCAATGCTATAAATGCTGCTACTGAGGCAGCATGCCTTATC
TTGAGTGTGGATGAGACAGTAAAGAACCCTAAGTCTGAAAGTGCACAAGG
TGAAGCTGCCGCGAGTGCCATGGGCGGCAGAGGGCGTGGTCGTGGGAGGG
GCATGCGCAGGCGATGAGCTTACGATATTTCAAGTCTTGAATGTCTTTTT
TGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTTCCTCATCTTTTGT
AGTCTCTCTATGTTGTGATTCCCAGTGTAAGTGAAAATTTAACAGACTGG
TGGTTACCCTCAGCCAGTTATGCCATTTGCGTTTGTTGTTGTTTGGTGAA
GGCAACGAGCCCACGAGACTATAGTTTTGTCCCATGGTGGAATTATGGCC
GTGGTTTTTATTATGGTAAATGGGGTTTTCTTCCAAAAAAAAAAAAAAAA
AAAAAACCCCATTTTCTAGTACCAGTTGGCATAAAAAAAAGGCCTTGGCT
ATCATTTTGTTGAAACGAAACGGCCCGTATCCGTCAAAGAAAAAATCTTT
ATTGGCCTCCCGCGGAAAATCCCCAAAATTGAGGGAAACAGGGGGGCACA
ATTCGGTTCCCGGGAACCCGGGCCCGGGGCGCAAAAATCCCCAAGGCGGC
ATGGACGGAAAAACCACTATGTCTCCGAGTTGGAAACAGCCTCTCAAGAT
CCAATTGTAACAGCCACGTTTTTTTCCATCAAGGGGTATACCATCTTTAC
CTATATTAAAAACCCCGGTTCTTTGACTAGTGGAGAAAAAAATCCCCCAA
GGGGCGAGTATCCCAGAAGAAGAGCCTCCACCCGTTCGTGATTGCCGTCC
ACCGGAGTGCCACGATATCCCGACCCCCCCATATCTTATAAATTACTCAT
TCTCTTGTCCAACACTCCCCCCCCCCCCATTACCACACCCAACGAAACAT
AAATCACCTACCCTACCCA
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