DY258812

Overview
NameDY258812
Unique NameDY258812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.095e-15
Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADS-FANFVWEPAVVKINAINAATEAACLILSVDETV 371
            +VAGGGA++ E++  LR+ +R++ GK Q  I  +A+ALE IP  L + AG +    L  LR KHA         GVD+  G IAD   A  V EP  VK   + +A EAA  IL +D+ +
Sbjct:  413 IVAGGGAVETELALRLREYARSVGGKEQLAIEKFAEALEEIPMILAETAGMEPIQTLMDLRAKHAKGLINA---GVDVMNGKIADDMLALNVLEPVRVKAQVLKSAVEAATAILKIDDLI 529          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.095e-15
Identity = 47/123 (38.21%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            LV GGGA +M ++  L ++S+A+ G  Q+   + A+ALEVIPR L  N G     +L  LR KH     E   +GV+  TG + D     +WEP  VK+     A E A L+L +D+ V   K
Sbjct:  407 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCE--TWGVNGETGTLVDVKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 527          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.057e-14
Identity = 48/124 (38.71%), Postives = 66/124 (53.23%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGA-PYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            LVAGGGA++M  S+ L ++   + G       + A ALE+IPR L  N G +    L  LR KHA  TG+G   +G+D  +G I D     +WEP  VK+     A E A L+L +D+ V   K
Sbjct:  409 LVAGGGAVEMAASQLLTRKQ--VKGP----YTAVAHALEIIPRTLAQNCGANTIRALTALRAKHASHTGDGVCAWGIDGESGEIVDMNVKNIWEPLAVKLQTYKTAVETAILLLRIDDIVSGSK 526          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.381e-14
Identity = 43/121 (35.54%), Postives = 71/121 (58.68%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDE 365
            K   L+AGGGA ++E+S+ + +ESRA+ G   F    +A+ALEVIP  L +NAG ++  V+ +LR +H   +GE    G+ +   G  +++   + +P +V  +AI  A E    IL +D+
Sbjct:  407 KERALIAGGGAPEIEVSRTIMRESRAMQGVEAFVWQEFAEALEVIPTTLAENAGLNSIKVVTELRSRH--ESGE-TNAGISVRRSGTTNTYDEHILQPVLVSTSAITLAAECVKSILRIDD 524          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.803e-14
Identity = 43/121 (35.54%), Postives = 73/121 (60.33%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDE 365
            K   L+AGGGA ++E+S  L +E+R + G   F    YA+ALEVIP  L +NAG ++ +V+ +LR +H    GE +  G+ +   G ++++ + + +P +V  +AI  A+E    IL +D+
Sbjct:  408 KERALIAGGGAPEIEVSYRLMKEARTMEGVEAFVWQEYAEALEVIPTTLAENAGLNSLNVVTELRLRH--ENGE-SNSGISVRRSGTSNTYEDHILQPVLVSTSAIRLASECVKSILRIDD 525          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.355e-14
Identity = 47/120 (39.17%), Postives = 70/120 (58.33%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADS-FANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++ GGGAI++E++  LR+ +R++ GK Q  I ++A ALE IP  L + AG +A   L  LR +HA         GVD+  G I D  +A  + EP  VK   + +ATEAA  IL +D+ +
Sbjct:  412 ILPGGGAIELELAMKLREYARSVGGKEQLAIEAFADALEEIPTILAETAGLEAISALMDLRARHAKGL---TNTGVDVIGGKIVDDVYALNIIEPIRVKAQVLKSATEAATAILKIDDLI 528          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.076e-14
Identity = 44/121 (36.36%), Postives = 70/121 (57.85%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDE 365
            K   L+AGGGA ++EIS+ L +E+R++ G   F    +A ALEVIP  L +NAG ++  V+ +LR KH    GE    G+ +   G  +++   + +P +V  +AI  A+E    IL +D+
Sbjct:  406 KERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKH--ENGE-LNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDD 523          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.076e-14
Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK-NPK 383
            ++  +VAGGG ++  +S YL   + ++A + Q  I  +AK+L VIP+ L  NA  DATD++ KLR  H      P      + G+D+  G + D+    V EPA+ KI ++  ATEAA  IL +D+ +K NP+
Sbjct:  407 ESKKVVAGGGCVEAALSIYLENFATSLASREQLAIAEFAKSLLVIPKTLSVNAAKDATDLVAKLRSYHNSSQTKPERSDLKWTGLDLIEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLNPE 539          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.018e-14
Identity = 47/127 (37.01%), Postives = 72/127 (56.69%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            ++  +VA GGA ++E+S  L + ++ + GK Q  I ++A+AL+VIPR L +NAG D  + L K+   H     +G   GVD+  G  AD     V  P  V   AI +A+EAA +IL +D+ +   K
Sbjct:  403 EDGKIVAAGGAPEIELSIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAH---KEKGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.018e-14
Identity = 47/120 (39.17%), Postives = 70/120 (58.33%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADS-FANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++ GGGAI++E++  LR+ +R++ GK Q  I ++A ALE IP  L + AG +A   L  LR +HA         GVD+  G I D  +A  + EP  VK   + +ATEAA  IL +D+ +
Sbjct:  412 ILPGGGAIELELAMKLREYARSVGGKEQLAIEAFADALEEIPLILAETAGLEAISSLMDLRARHAKGLSN---TGVDVIGGKIVDDVYALNIIEPIRVKSQVLKSATEAATAILKIDDLI 528          
The following BLAST results are available for this feature:
BLAST of DY258812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
THSA_SULTO8.095e-1540.83Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
TCPG_MACFA8.095e-1538.21T-complex protein 1 subunit gamma OS=Macaca fascic... [more]
TCPG_DROME1.057e-1438.71T-complex protein 1 subunit gamma OS=Drosophila me... [more]
TCPD_ASHGO1.381e-1435.54T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]
TCPD_KLULA1.803e-1435.54T-complex protein 1 subunit delta OS=Kluyveromyces... [more]
THSA_SULSH2.355e-1439.17Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
TCPD_YEAST3.076e-1436.36T-complex protein 1 subunit delta OS=Saccharomyces... [more]
TCPA_DROME3.076e-1437.59T-complex protein 1 subunit alpha OS=Drosophila me... [more]
THSB_THEK14.018e-1437.01Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSA_SULSO4.018e-1439.17Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258812 ID=DY258812; Name=DY258812; organism=Citrus clementina; type=EST; length=1269bp
CGAAGAATTCCACTTTAGTTGCTGGTGGTGGTGCTATAGATATGGAGATA
AGTAAATACTTGAGGCAGGAATCCCGCGCAATAGCCGGGAAGTCTCAGTT
TTTTATCAACTCTTATGCAAAAGCTCTCGAGGTTATCCCACGCCAGTTGT
GTGACAATGCTGGATTTGATGCTACTGATGTGCTGAATAAATTAAGACAG
AAACATGCGCTTCCAACTGGTGAGGGTGCCCCTTATGGAGTGGATATCAA
CACTGGTGGAATTGCAGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAG
TTGTCAAGATCAATGCTATAAATGCTGCTACTGAGGCAGCATGCCTTATC
TTGAGTGTGGATGAGACAGTAAAGAACCCTAAGTCTGAAAGTGCACAAGG
TGAAGCTGCCGCGAGTGCCATGGGCGGCAGAGGGCGTGGTCGTGGGAGGG
GCATGCGCAGGCGATGAGCTTACGATATTTCAAGTCTTGAATGTCTTTTT
TGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTTCCTCATCTTTTGT
AGTCTCTCTATGTTGTGATTCCCAGTGTAAGTGAAAATTTAACAGACTGG
TGGTTACCCTCAGCCAGTTATGCCATTTGCGTTTGTTGTTGTTTGGTGAA
GGCAACGAGCCCACGAGACTATAGTTTTGTCCCATGGTGGAATTATGGCC
GTGGTTTTTATTATGGTAAATGGGGTTTTCTTCCAAAAAAAAAAAAAAAA
AAAAAACCCCATTTTCTAGTACCAGTTGGCATAAAAAAAAGGCCTTGGCT
ATCATTTTGTTGAAACGAAACGGCCCGTATCCGTCAAAGAAAAAATCTTT
ATTGGCCTCCCGCGGAAAATCCCCAAAATTGAGGGAAACAGGGGGGCACA
ATTCGGTTCCCGGGAACCCGGGCCCGGGGCGCAAAAATCCCCAAGGCGGC
ATGGACGGAAAAACCACTATGTCTCCGAGTTGGAAACAGCCTCTCAAGAT
CCAATTGTAACAGCCACGTTTTTTTCCATCAAGGGGTATACCATCTTTAC
CTATATTAAAAACCCCGGTTCTTTGACTAGTGGAGAAAAAAATCCCCCAA
GGGGCGAGTATCCCAGAAGAAGAGCCTCCACCCGTTCGTGATTGCCGTCC
ACCGGAGTGCCACGATATCCCGACCCCCCCATATCTTATAAATTACTCAT
TCTCTTGTCCAACACTCCCCCCCCCCCCATTACCACACCCAACGAAACAT
AAATCACCTACCCTACCCA
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