DY258812

Overview
NameDY258812
Unique NameDY258812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.018e-14
Identity = 41/121 (33.88%), Postives = 71/121 (58.68%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDE 365
            K   L+AGGGA ++E+S+ +   S+ + G + + + +YA+ALE+IP  L +NAG     ++ +LR KHA   GE    G+++  G I +     V +P +V  +A+  ATE   ++L +D+
Sbjct:  411 KKKFLIAGGGAPEIEVSQQVTAFSKTLTGITSYCVRAYAEALEIIPYTLAENAGLHPISIVTELRNKHA--QGE-INSGINVRKGAITNILQENVVQPLLVSTSALTLATETVVMLLKIDD 528          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.018e-14
Identity = 41/121 (33.88%), Postives = 69/121 (57.02%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDE 365
            K   L+AGGGA ++EIS+ L +ESR++ G   +    +A+ALEVIP  L +NAG ++  V+ +LR +H          G+ +   G  +++   + +P +V  +AI  A+E    IL +D+
Sbjct:  407 KERGLIAGGGAPEIEISRRLERESRSMEGVEAYIWQEFAQALEVIPTTLAENAGLNSIKVITELRSRH---ENGDVNEGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDD 524          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.018e-14
Identity = 45/133 (33.83%), Postives = 78/133 (58.65%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL----PTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK-NPK 383
            ++ T+V GGGA++  +S YL   +  +  + Q  I+ +A++L V+P+QL  NA  DA+D+++KL+  H      P+ +   Y G+D+    + ++    V EPA+ KI  I  ATE+A  IL +D+ +  NP+
Sbjct:  404 ESGTIVPGGGAVESALSIYLDNIAATMGSRKQLAISEFAESLLVVPKQLAVNAALDASDLVSKLKAYHHAAQTDPSKKSYAYSGLDLFNNKVRNNLEAGVLEPAIAKIKCIKFATESAITILRIDDKITLNPR 536          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSB_DESMO (Thermosome subunit beta (Fragment) OS=Desulfurococcus mobilis GN=thsB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.247e-14
Identity = 42/117 (35.90%), Postives = 69/117 (58.97%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLIL 353
            ++  ++ GGGA ++E++K++R+ +  + GK Q  I ++AKALE +   L +NAG D  D++ KLR  H     +G    +D+ TG + +     V EP  +  NAI A TEAA +I+
Sbjct:  387 RDGKVIPGGGAAEIELAKHIRRLATRVGGKEQLAIEAFAKALEGLAVTLVENAGLDPIDMVMKLRAAH--EREDGKYLSIDLATGDLVNMREKGVIEPVSILANAIKAGTEAATIIM 501          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.247e-14
Identity = 46/129 (35.66%), Postives = 73/129 (56.59%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEG-----APYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            +++T+VAGGGA++  +S YL   +  +  + Q  I  +A AL +IP+ L  NA  DAT+++ KLR  H     +      +  G+D+  G I ++    V EPA+ K+  I  ATEAA  IL +D+ +K
Sbjct:  407 ESNTVVAGGGAVESALSVYLEHLATTLGSREQLAIAEFADALLIIPKVLAVNAAKDATELVAKLRAYHHTAQTKADKKHYSSMGLDLVNGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIK 535          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 6.853e-14
Identity = 47/120 (39.17%), Postives = 66/120 (55.00%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANF-VWEPAVVKINAINAATEAACLILSVDETV 371
            +VAGGGA++ E++  LR+ +R++ GK Q  I  +A+ALE IP  L + AG +    L  LR +HA         G+D   G IAD      V EP  VK   + +A EAA  IL +D+ V
Sbjct:  413 IVAGGGAVESELALRLREYARSVGGKEQLAIEKFAEALEEIPMILAETAGMEPIQALMDLRARHAKGLVNS---GIDAVNGKIADDMMKINVIEPVRVKSQVLKSAVEAATAILKIDDLV 529          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.853e-14
Identity = 46/131 (35.11%), Postives = 74/131 (56.49%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAP-------YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK-NPK 383
            +V GGGA+++ +S  L   +R +  K Q  +  + +AL +IP+ L  NA  DAT++++KLR  HA       P        G+D++ G + ++    V EP V KI ++  ATEAA  IL +D+ +K NP+
Sbjct:  408 VVPGGGAVEIALSIKLEDFARTLGTKEQTAVAEFCEALNIIPKVLAANAAQDATELVSKLRALHAASQSSDDPAKKELKNCGLDLSLGKVRNNVKAGVLEPMVSKIKSLRFATEAAITILRIDDMIKLNPQ 538          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.950e-14
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            ++  +VA GGA ++E++  L + ++ + GK Q  I ++A+AL+VIPR L +NAG D  + L K+   H     +G   GVD+  G  AD     V  P  V   AI +A+EAA +IL +D+ +   K
Sbjct:  403 EDGKIVAAGGAPEIELAIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAH---KEKGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.169e-13
Identity = 48/133 (36.09%), Postives = 66/133 (49.62%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP------TGEGA----PYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            L+ GGGA +M +S  LR+    + G  Q    +   A+EVIPR L  N G      + +LR KHA        +G G      +G+D  TG + D     VWEP  VK+  I  A E+AC+IL +D+ V   K
Sbjct:  422 LLPGGGATEMAVSVGLRKAGLKLEGIQQGPFLAVGDAMEVIPRTLAQNCGVSVIRTVTQLRAKHAAAYEDSETSGNGTFPKCNWGIDGTTGKLVDMEEFGVWEPFSVKVQTIKTAVESACMILRIDDIVSGSK 554          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.994e-13
Identity = 44/129 (34.11%), Postives = 75/129 (58.14%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ ++V GGGA++  +S YL   + ++  + Q  I  +A++L VIP  L  NA  D+TD++ KLR  H      P  +   + G+D++ G   D+    V+EP +VK+ ++  ATEAA  IL +D+ +K
Sbjct:  404 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532          
The following BLAST results are available for this feature:
BLAST of DY258812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
TCPD_DICDI4.018e-1433.88T-complex protein 1 subunit delta OS=Dictyostelium... [more]
TCPD_CANGA4.018e-1433.88T-complex protein 1 subunit delta OS=Candida glabr... [more]
TCPA_DICDI4.018e-1433.83T-complex protein 1 subunit alpha OS=Dictyostelium... [more]
THSB_DESMO5.247e-1435.90Thermosome subunit beta (Fragment) OS=Desulfurococ... [more]
TCPA_ARATH5.247e-1435.66T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]
THSA_SULAC6.853e-1439.17Thermosome subunit alpha OS=Sulfolobus acidocaldar... [more]
TCPA_TETPY6.853e-1435.11T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]
THSB_PYRKO8.950e-1436.22Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
TCPG_THAWE1.169e-1336.09T-complex protein 1 subunit gamma OS=Thalassiosira... [more]
TCPA_MACFA1.994e-1334.11T-complex protein 1 subunit alpha OS=Macaca fascic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3CC09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258812 ID=DY258812; Name=DY258812; organism=Citrus clementina; type=EST; length=1269bp
CGAAGAATTCCACTTTAGTTGCTGGTGGTGGTGCTATAGATATGGAGATA
AGTAAATACTTGAGGCAGGAATCCCGCGCAATAGCCGGGAAGTCTCAGTT
TTTTATCAACTCTTATGCAAAAGCTCTCGAGGTTATCCCACGCCAGTTGT
GTGACAATGCTGGATTTGATGCTACTGATGTGCTGAATAAATTAAGACAG
AAACATGCGCTTCCAACTGGTGAGGGTGCCCCTTATGGAGTGGATATCAA
CACTGGTGGAATTGCAGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAG
TTGTCAAGATCAATGCTATAAATGCTGCTACTGAGGCAGCATGCCTTATC
TTGAGTGTGGATGAGACAGTAAAGAACCCTAAGTCTGAAAGTGCACAAGG
TGAAGCTGCCGCGAGTGCCATGGGCGGCAGAGGGCGTGGTCGTGGGAGGG
GCATGCGCAGGCGATGAGCTTACGATATTTCAAGTCTTGAATGTCTTTTT
TGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTTCCTCATCTTTTGT
AGTCTCTCTATGTTGTGATTCCCAGTGTAAGTGAAAATTTAACAGACTGG
TGGTTACCCTCAGCCAGTTATGCCATTTGCGTTTGTTGTTGTTTGGTGAA
GGCAACGAGCCCACGAGACTATAGTTTTGTCCCATGGTGGAATTATGGCC
GTGGTTTTTATTATGGTAAATGGGGTTTTCTTCCAAAAAAAAAAAAAAAA
AAAAAACCCCATTTTCTAGTACCAGTTGGCATAAAAAAAAGGCCTTGGCT
ATCATTTTGTTGAAACGAAACGGCCCGTATCCGTCAAAGAAAAAATCTTT
ATTGGCCTCCCGCGGAAAATCCCCAAAATTGAGGGAAACAGGGGGGCACA
ATTCGGTTCCCGGGAACCCGGGCCCGGGGCGCAAAAATCCCCAAGGCGGC
ATGGACGGAAAAACCACTATGTCTCCGAGTTGGAAACAGCCTCTCAAGAT
CCAATTGTAACAGCCACGTTTTTTTCCATCAAGGGGTATACCATCTTTAC
CTATATTAAAAACCCCGGTTCTTTGACTAGTGGAGAAAAAAATCCCCCAA
GGGGCGAGTATCCCAGAAGAAGAGCCTCCACCCGTTCGTGATTGCCGTCC
ACCGGAGTGCCACGATATCCCGACCCCCCCATATCTTATAAATTACTCAT
TCTCTTGTCCAACACTCCCCCCCCCCCCATTACCACACCCAACGAAACAT
AAATCACCTACCCTACCCA
back to top