DY258812

Overview
NameDY258812
Unique NameDY258812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13831 contig Ccv1_Contig13831:1450..2718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.994e-13
Identity = 44/129 (34.11%), Postives = 75/129 (58.14%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ ++V GGGA++  +S YL   + ++  + Q  I  +A++L VIP  L  NA  D+TD++ KLR  H      P  +   + G+D++ G   D+    V+EP +VK+ ++  ATEAA  IL +D+ +K
Sbjct:  404 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.604e-13
Identity = 40/121 (33.06%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDE 365
            K   L+AGGG+ ++E ++ L + +R + G+    I ++++ALE+IP  L +NAG +A  V+ +LR +HA   GE    G+++  G + +     V +P +V I+AI  A E   +I+ +D+
Sbjct:  405 KQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEIIPVTLAENAGLNAIQVVTELRSRHA--NGEKTA-GINVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDD 522          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.401e-13
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ ++V GGGA++  +S YL   + ++  + Q  I  +A++L VIP  L  NA  D+TD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK+ ++  ATEAA  IL +D+ +K
Sbjct:  404 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLPVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.442e-13
Identity = 40/123 (32.52%), Postives = 71/123 (57.72%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++  ++  GGA ++E++  L + ++ + GK    I ++A AL++IP+ L +NAG D  ++L K+  +H      G   G+D+  G  AD     + EP  VK  AI +A+EAA +IL +D+ +
Sbjct:  403 EDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH---KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.442e-13
Identity = 40/123 (32.52%), Postives = 71/123 (57.72%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++  ++  GGA ++E++  L + ++ + GK    I ++A AL++IP+ L +NAG D  ++L K+  +H      G   G+D+  G  AD     + EP  VK  AI +A+EAA +IL +D+ +
Sbjct:  403 EDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH---KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPQ_CANAL (T-complex protein 1 subunit theta OS=Candida albicans GN=CCT8 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.442e-13
Identity = 46/123 (37.40%), Postives = 76/123 (61.79%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K++ L+ G GA+++E+ K +    ++  G  Q  I S+AKA EVIPR L + +G D++++L+KL   HA  TG  A  G+DI++G +AD+    V +    K +AI+ A +A   ILS+D+ +
Sbjct:  401 KDNRLLPGAGAVEIELMKRITAY-QSTPGLLQLAIKSFAKAFEVIPRVLAETSGHDSSEILSKLHAAHAEDTGLRA--GIDIDSGEVADT---AVLDILATKKSAIDLAVDATNTILSIDQII 517          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.442e-13
Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAP-------YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++  +V G GA +  +S YL   +  ++ + Q  I  +A+A+  IP+QL  NAG D+T+++ +LR  H   + +  P       +G+D+N   +AD     V+EP V KI ++  ATEAA  IL +D+ +K
Sbjct:  401 ESKRIVPGAGACETAVSIYLENYALTLSSREQLAIAEFARAMLSIPKQLAVNAGVDSTELVARLRSCH--NSSQSKPDQAHNKWWGLDLNNQYVADCKEIGVFEPLVSKIKSLKFATEAAITILRIDDLIK 529          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.801e-13
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ ++V GGGA++  +S YL   + ++  + Q  I  +A++L VIP  L  NA  D+TD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK+ ++  ATEAA  IL +D+ +K
Sbjct:  404 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLINGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.577e-13
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            ++  ++  GGA ++E++  L + ++ + GK Q  I ++A+AL+VIPR L +NAG D  + L K+   H     +G   GVD+  G  AD     V  P  V   AI +A+EAA +IL +D+ +   K
Sbjct:  403 EDGKILPAGGAPEIELAIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPVETLVKVIAAH---KEKGPTIGVDVFEGEPADMMEKGVIAPLRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPQ_SCHPO (Probable T-complex protein 1 subunit theta OS=Schizosaccharomyces pombe GN=cct8 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 7.577e-13
Identity = 42/123 (34.15%), Postives = 63/123 (51.22%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K++ L+ G GA DM++   L        G  Q  I  Y +A EV+PR + +NAG D TDV++KL   H    GE     V+    G  D+    +++  + K +AI  ATE    +L+VD+ V
Sbjct:  404 KDNRLIFGAGASDMQLCIRLISVGEKTPGIYQHAIKQYGEAFEVVPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAKEAGIFDVLLAKKSAIRLATETVLTVLNVDQVV 526          
The following BLAST results are available for this feature:
BLAST of DY258812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
TCPA_HUMAN1.994e-1334.11T-complex protein 1 subunit alpha OS=Homo sapiens ... [more]
TCPD_SCHPO2.604e-1333.06T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPA_BOVIN3.401e-1334.11T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]
THSA_THEK14.442e-1332.52Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO4.442e-1332.52Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
TCPQ_CANAL4.442e-1337.40T-complex protein 1 subunit theta OS=Candida albic... [more]
TCPA_SCHMA4.442e-1333.59T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
TCPA_CRIGR5.801e-1334.11T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]
THS_DESSY7.577e-1334.65Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
TCPQ_SCHPO7.577e-1334.15Probable T-complex protein 1 subunit theta OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258812 ID=DY258812; Name=DY258812; organism=Citrus clementina; type=EST; length=1269bp
CGAAGAATTCCACTTTAGTTGCTGGTGGTGGTGCTATAGATATGGAGATA
AGTAAATACTTGAGGCAGGAATCCCGCGCAATAGCCGGGAAGTCTCAGTT
TTTTATCAACTCTTATGCAAAAGCTCTCGAGGTTATCCCACGCCAGTTGT
GTGACAATGCTGGATTTGATGCTACTGATGTGCTGAATAAATTAAGACAG
AAACATGCGCTTCCAACTGGTGAGGGTGCCCCTTATGGAGTGGATATCAA
CACTGGTGGAATTGCAGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAG
TTGTCAAGATCAATGCTATAAATGCTGCTACTGAGGCAGCATGCCTTATC
TTGAGTGTGGATGAGACAGTAAAGAACCCTAAGTCTGAAAGTGCACAAGG
TGAAGCTGCCGCGAGTGCCATGGGCGGCAGAGGGCGTGGTCGTGGGAGGG
GCATGCGCAGGCGATGAGCTTACGATATTTCAAGTCTTGAATGTCTTTTT
TGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTTCCTCATCTTTTGT
AGTCTCTCTATGTTGTGATTCCCAGTGTAAGTGAAAATTTAACAGACTGG
TGGTTACCCTCAGCCAGTTATGCCATTTGCGTTTGTTGTTGTTTGGTGAA
GGCAACGAGCCCACGAGACTATAGTTTTGTCCCATGGTGGAATTATGGCC
GTGGTTTTTATTATGGTAAATGGGGTTTTCTTCCAAAAAAAAAAAAAAAA
AAAAAACCCCATTTTCTAGTACCAGTTGGCATAAAAAAAAGGCCTTGGCT
ATCATTTTGTTGAAACGAAACGGCCCGTATCCGTCAAAGAAAAAATCTTT
ATTGGCCTCCCGCGGAAAATCCCCAAAATTGAGGGAAACAGGGGGGCACA
ATTCGGTTCCCGGGAACCCGGGCCCGGGGCGCAAAAATCCCCAAGGCGGC
ATGGACGGAAAAACCACTATGTCTCCGAGTTGGAAACAGCCTCTCAAGAT
CCAATTGTAACAGCCACGTTTTTTTCCATCAAGGGGTATACCATCTTTAC
CTATATTAAAAACCCCGGTTCTTTGACTAGTGGAGAAAAAAATCCCCCAA
GGGGCGAGTATCCCAGAAGAAGAGCCTCCACCCGTTCGTGATTGCCGTCC
ACCGGAGTGCCACGATATCCCGACCCCCCCATATCTTATAAATTACTCAT
TCTCTTGTCCAACACTCCCCCCCCCCCCATTACCACACCCAACGAAACAT
AAATCACCTACCCTACCCA
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