DY258812

Overview
NameDY258812
Unique NameDY258812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 7.577e-13
Identity = 43/124 (34.68%), Postives = 70/124 (56.45%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            K S  VAG GA ++ +S  +  E++ +AGK    + ++ +AL  +P  +CDNAG D+ +++ +LR +HA         G+DI  G +AD     V E   VK+  +++A EA   IL VD+ +K
Sbjct:  396 KESKTVAGAGASEILMSSAIAVEAQKVAGKEALAVEAFGRALAQLPTIICDNAGLDSAELVTRLRAEHA---NGRHNMGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQILRVDDIIK 516          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.577e-13
Identity = 43/129 (33.33%), Postives = 74/129 (57.36%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ ++V GGGA++  +S YL   + ++  + Q  I  +A++L +IP  L  NA  D+TD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK+ ++  ATEAA  IL +D+ +K
Sbjct:  404 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLIIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNRQTGVFEPTMVKVKSLKFATEAAITILRIDDLIK 532          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.896e-13
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANF-VWEPAVVKINAINAATEAACLILSVDETV 371
            +VAGGGA++ E++K LR ++R + GK Q   N++A ALE     L + AG D    L ++R KHA         G+D+    I D+     V +   VK   + +ATEAA  IL +D+ +
Sbjct:  400 IVAGGGAVEEELAKRLRDDARKVIGKEQLAFNAFADALEEYVSILSETAGMDPISALTEIRHKHATGLKNA---GIDVTKARIYDNMLELRVIDSLKVKEQVLKSATEAATAILKIDDMI 516          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.896e-13
Identity = 43/133 (32.33%), Postives = 71/133 (53.38%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAP---------YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++  +V GGGA++  +S YL   + ++  + Q  I  +A+AL +IPR L  NA  D+T++  KLR  HA                 YG+D+  G I D+    V EP++ K+ ++ +A EA   IL +D ++K
Sbjct:  409 ESGKVVPGGGAVETALSIYLENFATSLGSREQLAIAEFAQALLIIPRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKNYGLDLLNGVIRDNVKAGVLEPSMSKLKSLKSAVEACIAILRIDTSIK 541          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.896e-13
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ ++V GGGA++  +S YL   + ++  + Q  I  +A++L VIP  L  NA  D+TD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK+ ++  ATEAA  IL +D+ +K
Sbjct:  404 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 9.896e-13
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ ++V GGGA++  +S YL   + ++  + Q  I  +A++L VIP  L  NA  D+TD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK+ ++  ATEAA  IL +D+ +K
Sbjct:  404 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_ENCCU (T-complex protein 1 subunit alpha OS=Encephalitozoon cuniculi GN=TCP1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.292e-12
Identity = 42/129 (32.56%), Postives = 76/129 (58.91%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKL--RQKHALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 380
            +++++V GGGA++  +S  L + +  +  K    I+ YA++L  IP+ L  NAG D+ +++  L   Q   +    G+ + G+D+ +G I D+F   + EP+V K+ ++ AATEAA  IL ++E +  P
Sbjct:  406 ESNSVVPGGGAVECALSLMLEKFAFTVNSKEHVAIHRYAESLLSIPKILSTNAGLDSNELVANLLSSQSREMANSSGSKFLGIDVTSGKIQDNFEFGIIEPSVNKMKSLKAATEAAISILRINEVIILP 534          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.688e-12
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K   L+ GGGA +MEI+  LR  ++   G +Q+   ++A ALE+IP  L +NAG      + +LR  HA      + YGV++  G + D     V +P +V  +AI  A+E    IL +D+ V
Sbjct:  417 KKKALLPGGGAPEMEIAVKLRNLAQTQHGATQYCWRAFADALELIPYTLAENAGLSPIHTVTELRNNHA---NGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSILKIDDIV 536          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.688e-12
Identity = 44/129 (34.11%), Postives = 73/129 (56.59%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ ++V GGGA++  +S YL   + ++  + Q  I  +A++L +IP  L  NA  DATD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK  ++  ATEAA  IL +D+ +K
Sbjct:  407 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLIIPNTLAVNAAQDATDLVAKLRAFHNEAQVNPERKNLKWIGLDLINGKPRDNKQAGVFEPTLVKTKSLKFATEAAITILRIDDLIK 535          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.688e-12
Identity = 44/126 (34.92%), Postives = 72/126 (57.14%), Query Frame = 3
Query:   12 TLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++V GGGA++  +S YL   + ++  + Q  I  +A++L VIP  L  NA  D+TD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK+ ++  ATEAA  IL +D+ +K
Sbjct:  407 SVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532          
The following BLAST results are available for this feature:
BLAST of DY258812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
TCPB_CAEEL7.577e-1334.68T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPA_MONDO7.577e-1333.33T-complex protein 1 subunit alpha OS=Monodelphis d... [more]
THSG_SULSO9.896e-1335.83Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
TCPA_SCHPO9.896e-1332.33T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPA_RAT9.896e-1334.11T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA1_MOUSE9.896e-1334.11T-complex protein 1 subunit alpha A OS=Mus musculu... [more]
TCPA_ENCCU1.292e-1232.56T-complex protein 1 subunit alpha OS=Encephalitozo... [more]
TCPD_CAEEL1.688e-1234.96T-complex protein 1 subunit delta OS=Caenorhabditi... [more]
TCPA_PALPA1.688e-1234.11T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]
TCPA2_MOUSE1.688e-1234.92T-complex protein 1 subunit alpha B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258812 ID=DY258812; Name=DY258812; organism=Citrus clementina; type=EST; length=1269bp
CGAAGAATTCCACTTTAGTTGCTGGTGGTGGTGCTATAGATATGGAGATA
AGTAAATACTTGAGGCAGGAATCCCGCGCAATAGCCGGGAAGTCTCAGTT
TTTTATCAACTCTTATGCAAAAGCTCTCGAGGTTATCCCACGCCAGTTGT
GTGACAATGCTGGATTTGATGCTACTGATGTGCTGAATAAATTAAGACAG
AAACATGCGCTTCCAACTGGTGAGGGTGCCCCTTATGGAGTGGATATCAA
CACTGGTGGAATTGCAGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAG
TTGTCAAGATCAATGCTATAAATGCTGCTACTGAGGCAGCATGCCTTATC
TTGAGTGTGGATGAGACAGTAAAGAACCCTAAGTCTGAAAGTGCACAAGG
TGAAGCTGCCGCGAGTGCCATGGGCGGCAGAGGGCGTGGTCGTGGGAGGG
GCATGCGCAGGCGATGAGCTTACGATATTTCAAGTCTTGAATGTCTTTTT
TGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTTCCTCATCTTTTGT
AGTCTCTCTATGTTGTGATTCCCAGTGTAAGTGAAAATTTAACAGACTGG
TGGTTACCCTCAGCCAGTTATGCCATTTGCGTTTGTTGTTGTTTGGTGAA
GGCAACGAGCCCACGAGACTATAGTTTTGTCCCATGGTGGAATTATGGCC
GTGGTTTTTATTATGGTAAATGGGGTTTTCTTCCAAAAAAAAAAAAAAAA
AAAAAACCCCATTTTCTAGTACCAGTTGGCATAAAAAAAAGGCCTTGGCT
ATCATTTTGTTGAAACGAAACGGCCCGTATCCGTCAAAGAAAAAATCTTT
ATTGGCCTCCCGCGGAAAATCCCCAAAATTGAGGGAAACAGGGGGGCACA
ATTCGGTTCCCGGGAACCCGGGCCCGGGGCGCAAAAATCCCCAAGGCGGC
ATGGACGGAAAAACCACTATGTCTCCGAGTTGGAAACAGCCTCTCAAGAT
CCAATTGTAACAGCCACGTTTTTTTCCATCAAGGGGTATACCATCTTTAC
CTATATTAAAAACCCCGGTTCTTTGACTAGTGGAGAAAAAAATCCCCCAA
GGGGCGAGTATCCCAGAAGAAGAGCCTCCACCCGTTCGTGATTGCCGTCC
ACCGGAGTGCCACGATATCCCGACCCCCCCATATCTTATAAATTACTCAT
TCTCTTGTCCAACACTCCCCCCCCCCCCATTACCACACCCAACGAAACAT
AAATCACCTACCCTACCCA
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