DY258812

Overview
NameDY258812
Unique NameDY258812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.205e-12
Identity = 43/126 (34.13%), Postives = 74/126 (58.73%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQK--HALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            K +  V GGG  +M +SK +  E++ I GK    + ++A+AL  +P  L DNAGFD++++++KLR    + + T      G+D+N G IAD     + E   +K   +++A+EAA ++L VD  ++
Sbjct:  396 KETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTS-----GLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIR 516          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPA_AMBME (T-complex protein 1 subunit alpha (Fragment) OS=Ambystoma mexicanum PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.760e-12
Identity = 43/129 (33.33%), Postives = 73/129 (56.59%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ ++V GGGA++  +S YL   + ++  + Q  I  +A++L VIP+ L  N   D+TD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK  ++  ATEAA  IL +D+ +K
Sbjct:   22 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPKTLAVNRAQDSTDLVAKLRAFHNEAQVNPDRKNLKWIGLDLVNGKARDNKQAGVFEPTMVKTKSLKFATEAAITILRIDDLIK 150          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.429e-11
Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDI-NTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            +V G GA ++ I+  +R E+  I G+ Q  + +YA A+E +PR L +N G D  D L  LR ++     EG    +    +G I D     V +P  VK  AI +ATEAA +I+ +D+ +
Sbjct:  405 VVPGAGATEIAIADRIRSEAAGIEGRKQLAVEAYADAVEALPRTLAENTGMDPIDALVDLRARYET---EGLAGIISSGRSGEIGDPVELGVIDPVAVKREAIESATEAATMIVRIDDVI 521          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSG_SULSH (Thermosome subunit gamma OS=Sulfolobus shibatae GN=thsC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.866e-11
Identity = 43/120 (35.83%), Postives = 64/120 (53.33%), Query Frame = 3
Query:   15 LVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANF-VWEPAVVKINAINAATEAACLILSVDETV 371
            +VAGGGA++ E++K LR+ +  + GK Q   N++A ALE     L + AG D    L ++R KHA         G+DI    I D+     V +   VK   + +ATEAA  IL +D+ +
Sbjct:  400 IVAGGGAVEEELAKRLRENAGKVPGKEQLAFNAFADALEEYVSILSETAGMDPISALTEIRHKHANGLKNA---GIDIVKARIYDNMLELKVIDSLKVKEQVLKSATEAATAILKIDDMI 516          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.866e-11
Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K    +AGGGA ++E++  L   ++ + G   +   ++A ALEVIP  L +NAG +    + +LR +HA   GE    G+++  G I D  A  V +P +V  ++I  A+E    IL +D+ +
Sbjct:  410 KKRAQIAGGGAPEIEMAIQLAAHAQTLEGVDAYCFRAFANALEVIPSTLAENAGLNPIATVTELRNRHA--QGE-KNAGINVRKGAITDILAENVVQPLLVSTSSITLASETVRSILKIDDII 529          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 2.437e-11
Identity = 45/125 (36.00%), Postives = 68/125 (54.40%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEG-APYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            K+S  V GGG  +M ++  + Q +    GK    + SYAKAL ++P  + DNAG+D+ D++ +LR  H+    EG    G+D+  G I D     + E   VK   + +A EAA +IL VD  +K
Sbjct:  402 KDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHS----EGNTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIK 522          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 2.437e-11
Identity = 45/125 (36.00%), Postives = 68/125 (54.40%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEG-APYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            K+S  V GGG  +M ++  + Q +    GK    + SYAKAL ++P  + DNAG+D+ D++ +LR  H+    EG    G+D+  G I D     + E   VK   + +A EAA +IL VD  +K
Sbjct:  402 KDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHS----EGNTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIK 522          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 2.437e-11
Identity = 45/125 (36.00%), Postives = 68/125 (54.40%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEG-APYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            K+S  V GGG  +M ++  + Q +    GK    + SYAKAL ++P  + DNAG+D+ D++ +LR  H+    EG    G+D+  G I D     + E   VK   + +A EAA +IL VD  +K
Sbjct:  402 KDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHS----EGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIK 522          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPQ_CAEEL (T-complex protein 1 subunit theta OS=Caenorhabditis elegans GN=Y55F3AR.3 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.183e-11
Identity = 40/123 (32.52%), Postives = 64/123 (52.03%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K+  L+AG GA+++E++K +        G  Q+ I  +A ALE +P+ + +NAG   T+ L KL  +H          G+DI      D+  N +++    K  AI  AT+AA  IL VD+ +
Sbjct:  437 KDGKLLAGAGAVEIELAKEIESFGAKAPGLEQYAIKKFAHALETLPKAIAENAGMPTTETLTKLYAEHVAGKKNA---GIDIWKRETMDAVVNNIFDLYAGKRLAIKLATDAASTILKVDQII 556          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: THSB_THEK8 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-8) GN=thsB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.158e-11
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            ++  +VA GGA ++E++  + + ++ + GK Q  I ++A+AL+VIPR L  NAG D  + L K+   H     +G   GVD+  G  AD     V  P  V   AI +A +AA +IL +D+ +   K
Sbjct:  403 EDGKIVAAGGAPEIELAISVDEYAKEVGGKEQLAIEAFAEALKVIPRTLAGNAGLDPIETLVKVIAAH---KEKGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSA-KAAIMILRIDDVIAASK 525          
The following BLAST results are available for this feature:
BLAST of DY258812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
TCPB_YEAST2.205e-1234.13T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPA_AMBME3.760e-1233.33T-complex protein 1 subunit alpha (Fragment) OS=Am... [more]
THS3_HALVO1.429e-1135.00Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
THSG_SULSH1.866e-1135.83Thermosome subunit gamma OS=Sulfolobus shibatae GN... [more]
TCPD_AEDTR1.866e-1132.52T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPB_MACFA2.437e-1136.00T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN2.437e-1136.00T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPB_BOVIN2.437e-1136.00T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPQ_CAEEL3.183e-1132.52T-complex protein 1 subunit theta OS=Caenorhabditi... [more]
THSB_THEK84.158e-1134.65Thermosome subunit beta OS=Thermococcus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258812 ID=DY258812; Name=DY258812; organism=Citrus clementina; type=EST; length=1269bp
CGAAGAATTCCACTTTAGTTGCTGGTGGTGGTGCTATAGATATGGAGATA
AGTAAATACTTGAGGCAGGAATCCCGCGCAATAGCCGGGAAGTCTCAGTT
TTTTATCAACTCTTATGCAAAAGCTCTCGAGGTTATCCCACGCCAGTTGT
GTGACAATGCTGGATTTGATGCTACTGATGTGCTGAATAAATTAAGACAG
AAACATGCGCTTCCAACTGGTGAGGGTGCCCCTTATGGAGTGGATATCAA
CACTGGTGGAATTGCAGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAG
TTGTCAAGATCAATGCTATAAATGCTGCTACTGAGGCAGCATGCCTTATC
TTGAGTGTGGATGAGACAGTAAAGAACCCTAAGTCTGAAAGTGCACAAGG
TGAAGCTGCCGCGAGTGCCATGGGCGGCAGAGGGCGTGGTCGTGGGAGGG
GCATGCGCAGGCGATGAGCTTACGATATTTCAAGTCTTGAATGTCTTTTT
TGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTTCCTCATCTTTTGT
AGTCTCTCTATGTTGTGATTCCCAGTGTAAGTGAAAATTTAACAGACTGG
TGGTTACCCTCAGCCAGTTATGCCATTTGCGTTTGTTGTTGTTTGGTGAA
GGCAACGAGCCCACGAGACTATAGTTTTGTCCCATGGTGGAATTATGGCC
GTGGTTTTTATTATGGTAAATGGGGTTTTCTTCCAAAAAAAAAAAAAAAA
AAAAAACCCCATTTTCTAGTACCAGTTGGCATAAAAAAAAGGCCTTGGCT
ATCATTTTGTTGAAACGAAACGGCCCGTATCCGTCAAAGAAAAAATCTTT
ATTGGCCTCCCGCGGAAAATCCCCAAAATTGAGGGAAACAGGGGGGCACA
ATTCGGTTCCCGGGAACCCGGGCCCGGGGCGCAAAAATCCCCAAGGCGGC
ATGGACGGAAAAACCACTATGTCTCCGAGTTGGAAACAGCCTCTCAAGAT
CCAATTGTAACAGCCACGTTTTTTTCCATCAAGGGGTATACCATCTTTAC
CTATATTAAAAACCCCGGTTCTTTGACTAGTGGAGAAAAAAATCCCCCAA
GGGGCGAGTATCCCAGAAGAAGAGCCTCCACCCGTTCGTGATTGCCGTCC
ACCGGAGTGCCACGATATCCCGACCCCCCCATATCTTATAAATTACTCAT
TCTCTTGTCCAACACTCCCCCCCCCCCCATTACCACACCCAACGAAACAT
AAATCACCTACCCTACCCA
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