DY258814

Overview
NameDY258814
Unique NameDY258814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig410 contig Ccv1_Contig410:36..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258814 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 39/90 (43.33%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  140 SNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 409
            SN   +L+VVDF+A+WCGPC+ I PF   + +K P+V+F+++DVD+ + VA+   V+ MPTF F K  + V +  G+ KE+L++ I K++
Sbjct:   16 SNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKYM 105          
BLAST of DY258814 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  152 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 397
            ++LVVVDF+A+WCGPC+ I PF   L  K  +V+F+++DVD+ + VAT   V+ MPTF F K GK V +  G+ KE+L++TI
Sbjct:   20 EKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101          
BLAST of DY258814 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.176e-17
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  116 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTF-MFLKEGKIVDKVVGSKKEELQQTI 397
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF  F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
BLAST of DY258814 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.470e-17
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  155 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK-IVDKVVGSKKEELQQTIAKH 406
            +LVV+DFTASWCGPC+ IAP   E+AK+ P+V+F KVDVDE    A    ++AMPTF F K GK + D V G+ +  L++ I K+
Sbjct:   21 KLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of DY258814 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 2
Query:   89 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 397
            +V+   + E+WN  + ++      +V  FTA WC P  F+  F  ELA    + LFL VDVDE+K VA+   V+AMPTF+FLK+G  +DK+VG+  +E+++ +
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105          
BLAST of DY258814 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 2
Query:  122 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 424
            NE L+KS ++ +L++VDF A+WCGPCR I+P    L+ +  N  FLKV+ D  + +   +++ AMPTF+F K  + VD V G+ +  +  TI KH ++  A
Sbjct:   13 NEILEKS-DSNRLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKHYSSTPA 112          
BLAST of DY258814 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 38/96 (39.58%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  125 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 412
            EQL + +  K ++++DF A+WCGPC+ IAP   ELA     ++F KVDVDE + + + + V+ MPTF+F K G  ++ + G  ++EL+Q + +H++
Sbjct:   19 EQLIRQHPEK-IIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVS 113          
BLAST of DY258814 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 2
Query:  155 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIA 400
            +LVVVDF A+WCGPC+ IAP + + +++ P   F K+DVDEL  VA    V AMPT +  K GK V KVVG+    ++Q IA
Sbjct:   19 KLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 100          
BLAST of DY258814 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 43/107 (40.19%), Postives = 67/107 (62.62%), Query Frame = 2
Query:   92 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK--LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 406
            V+    + A++  L+ + +  +LVVVDFTA+WCGPC+ I P    L+K     NV+FLKVDVD+   V++   ++ MPTF F K G+ +D+  G+ ++ L+Q I  H
Sbjct:    2 VVHIENLNAFSAALKNAGD--KLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          
BLAST of DY258814 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 8.430e-16
Identity = 45/117 (38.46%), Postives = 71/117 (60.68%), Query Frame = 2
Query:   53 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 403
            P +  M   E  +V    + E +   L+++ E  +LV VDF+A+WCGPCR I PF   L+ K  +V+FL+VD D  + V  + A+  +PTF F K+ + VD++ G+ KE+L+  IA+
Sbjct:  437 PEEETMEFPEGDKVKVILSKEDFEASLKEAGE--RLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAE 551          
The following BLAST results are available for this feature:
BLAST of DY258814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
THIO_OPHHA2.370e-1843.33Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_CHICK3.095e-1850.00Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_PONAB1.176e-1747.37Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_GEOCY4.470e-1751.76Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
TRXL4_ARATH5.838e-1740.78Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
NGLY1_CAEBR5.838e-1740.59Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO1_CAEEL2.897e-1639.58Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
TRX1_YEAST4.942e-1650.00Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO_ICTPU6.454e-1640.19Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
TXND2_HUMAN8.430e-1638.46Thioredoxin domain-containing protein 2 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258814 ID=DY258814; Name=DY258814; organism=Citrus clementina; type=EST; length=688bp
AAAGCGAGGGAGAGAATATAAGTATCGTTGGGTGGAGTAGTGGTGGTAAT
AACCGCGGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGG
TGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAAC
CAAACAGCTGGTTGTTGTTGATTTCACTGCTTCGTGGTGCGGACCATGCC
GTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTC
CTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTG
GGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTG
TGGACAAGGTGGTTGGATCAAAGAAAGAGGAACTGCAGCAGACTATTGCT
AAGCATCTGGCAACTGCCTCTGCCTAATAAGTTATAACTATCCTCCTGCC
TTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATT
TACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATT
CCGTAATTTACTGTTCTATGAAGCTCATACTGTGGTCTTTACAATAATTT
AATTTCATATTTGGGGTAGATCGTTCTTTGTTGTTGAACCTAATTTTGAT
ATTGAGAGTGACTCATATTTTGTTGAGTGTGTTCCTGG
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