DY258826

Overview
NameDY258826
Unique NameDY258826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1215
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1258 contig Ccv1_Contig1258:1..1215. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258826 vs. ExPASy Swiss-Prot
Match: TYRB_SALTY (Aromatic-amino-acid aminotransferase OS=Salmonella typhimurium GN=tyrB PE=3 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 9.347e-37
Identity = 81/197 (41.12%), Postives = 113/197 (57.36%), Query Frame = 1
Query:  190 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTAGLDLEGMIADIKAAPGGSFILLHGWAHNPTGIDPTPEKWEKI 777
            F+ V     DPIL + E FK D+   K+NL +G Y  E+ + P +  V +    L  +      YLP+EGL  +    A LLFGAD+ VL++QRVAT+Q L G+G+L++ A  ++RYFP A V +S PTW NH  IF  A    S Y +YD  T G+    ++A +   P  S +LLH   HNPTG D TP +W+ +
Sbjct:    2 FQKVDAYAGDPILSLMERFKDDSRHDKVNLSIGLYYNEDGIIPQLKTVAEAEARLNAQPHGASLYLPMEGLNTYRHTIAPLLFGADHPVLQQQRVATIQTLGGSGALKVGADFLKRYFPDAGVWVSDPTWENHIAIFAGAGFEVSTYPWYDDATNGIRFNDLLATLNTLPARSIVLLHPCCHNPTGADLTPSQWDAV 198          
BLAST of DY258826 vs. ExPASy Swiss-Prot
Match: TYRB_ECOLI (Aromatic-amino-acid aminotransferase OS=Escherichia coli (strain K12) GN=tyrB PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.639e-36
Identity = 81/197 (41.12%), Postives = 113/197 (57.36%), Query Frame = 1
Query:  190 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTAGLDLEGMIADIKAAPGGSFILLHGWAHNPTGIDPTPEKWEKI 777
            F+ V     DPIL + E FK D    K+NL +G Y  E+ + P +  V +    L  +      YLP+EGL  +    A LLFGAD+ VLK+QRVAT+Q L G+G+L++ A  ++RYFP + V +S PTW NH  IF  A    S Y +YD  T G+    ++A +K  P  S +LLH   HNPTG D T ++W+ +
Sbjct:    2 FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAV 198          
BLAST of DY258826 vs. ExPASy Swiss-Prot
Match: TYRB_KLEPN (Tyrosine aminotransferase OS=Klebsiella pneumoniae GN=tyrB PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.492e-34
Identity = 73/197 (37.06%), Postives = 114/197 (57.87%), Query Frame = 1
Query:  190 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTAGLDLEGMIADIKAAPGGSFILLHGWAHNPTGIDPTPEKWEKI 777
            F+ V     DPIL + E FK D    K+NL +G Y  ++ + P +  V +    L  E      YLP+EG + + +  A LLFGA+++ LK+ R+A++Q + G+G+L++ A  ++RYFP + V +S PTW NH  IF  A    S Y ++D  T G+  E ++A ++  P    +LLH   HNPTG D TP +W+++
Sbjct:    2 FQKVDAYAGDPILSLMERFKEDPRSDKVNLSIGLYYNDDGIIPQLQAVAEAEARLNAEPHGASLYLPMEGFSGYRQAIAPLLFGAEHTALKQNRIASIQTVGGSGALKVGADFLKRYFPESHVWVSDPTWENHIAIFEGAGFEVSTYPWFDKATNGVRFENLLAMLQTLPARDIVLLHPCCHNPTGADLTPAQWDRV 198          
BLAST of DY258826 vs. ExPASy Swiss-Prot
Match: TYRB_PARDE (Aromatic-amino-acid aminotransferase OS=Paracoccus denitrificans GN=tyrB PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.675e-33
Identity = 77/189 (40.74%), Postives = 104/189 (55.03%), Query Frame = 1
Query:  214 PDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTAGLDLEGMIADIKAAPGGSFILLHGWAHNPTGIDPTPEKWEKIA 780
            PD IL +   F+AD  + K++LGVG Y+       ++  V  AE  MLE    K Y  + G   F K   EL+ G     LK +  AT+  + GTG+LR A  L     P  +V +S PTW NH +I N   +P   YRY+D +T G+D EGM AD+ AA  G  +LLHG  HNPTG + T ++W +IA
Sbjct:   10 PDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDG---LKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIA 195          
BLAST of DY258826 vs. ExPASy Swiss-Prot
Match: PHHC_PSEAE (Aromatic-amino-acid aminotransferase OS=Pseudomonas aeruginosa GN=phhC PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.307e-30
Identity = 76/199 (38.19%), Postives = 106/199 (53.27%), Query Frame = 1
Query:  181 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTAGLDLEGMIADIKAAPGGSFILLHGWAHNPTGIDPTPEKWEKI 777
            +S F  V   P DPILG+ +A++ D    KL+LGVG Y+  +    +L  VK AE  ++E+   K Y+   G A F    AEL  GA + +L EQR    Q   GTG+LRLA   I    PG  + +S PTW  H+ +F  A +  S Y Y       LD+E M+A ++  P G  +LLH   HNPTG D + + W ++
Sbjct:    1 MSHFAKVARVPGDPILGLLDAYRNDPRADKLDLGVGVYKDAQGLTPILRSVKLAEQRLVEQETTKSYVGGHGDALFAARLAELALGAASPLLLEQRADATQTPGGTGALRLAGDFIAHCLPGRGIWLSDPTWPIHETLFAAAGLKVSHYPYVSADNR-LDVEAMLAGLERIPQGDVVLLHACCHNPTGFDLSHDDWRRV 198          
BLAST of DY258826 vs. ExPASy Swiss-Prot
Match: AATM_YEAST (Aspartate aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=AAT1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 8.207e-25
Identity = 78/215 (36.28%), Postives = 107/215 (49.77%), Query Frame = 1
Query:  184 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM---LERGENKEYLPIEGLAAFNKVTAELLFGADNS-----VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTAGLDLEGMIADIKAAPGGS---------FILLHGWAHNPTGIDPTPEKWEKI 777
            S    V  APPD +LG+SE FK   +  K++L VG Y+    +      V KA+ L+   LE  +N  YLPI G   F +   + LF           L   R++ VQ LSGTG+L +AA  +   F    + I  P+W NHKNIF +     + YRY   K   +D++G I  +K     +          I+LH   HNPTG+DPT E+WEKI
Sbjct:   18 SSLSRVPRAPPDKVLGLSEHFKKVKNVNKIDLTVGIYKDGWGKVTTFPSVAKAQKLIESHLELNKNLSYLPITGSKEFQENVMKFLFKESCPQFGPFYLAHDRISFVQTLSGTGALAVAAKFLA-LFISRDIWIPDPSWANHKNIFQNNGFE-NIYRYSYYKDGQIDIDGWIEQLKTFAYNNQQENNKNPPCIILHACCHNPTGLDPTKEQWEKI 230          
BLAST of DY258826 vs. ExPASy Swiss-Prot
Match: ATTY_RHIME (Tyrosine aminotransferase OS=Rhizobium meliloti GN=tatA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.979e-22
Identity = 65/197 (32.99%), Postives = 102/197 (51.78%), Query Frame = 1
Query:  190 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTAGLDLEGMIADIKAAPGGSFILLHGWAHNPTGIDPTPEKWEKIA 780
            F+ +     DP+L +   F+ D    K++LGVG YR E  +  +   VK AE  +LE  ++K Y+  EG   F     EL+ G     ++   VA VQ   G+G+LRLAA LI R   G  + +  P+W NH  IF  A +  + Y ++D  +  +  + +++ ++ A  G  +LLH   HNPTG   +  +W +IA
Sbjct:    2 FDALARQADDPLLALIGLFRKDERPGKVDLGVGVYRDETGRTPIFRAVKAAEKRLLETQDSKAYIGPEGDLVFLDRLWELVGG---DTIERSHVAGVQTPGGSGALRLAADLIAR-MGGRGIWLGLPSWPNHAPIFKAAGLDIATYDFFDIPSQSVIFDNLVSALEGAASGDAVLLHASCHNPTGGVLSEAQWMEIA 194          
The following BLAST results are available for this feature:
BLAST of DY258826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
TYRB_SALTY9.347e-3741.12Aromatic-amino-acid aminotransferase OS=Salmonella... [more]
TYRB_ECOLI4.639e-3641.12Aromatic-amino-acid aminotransferase OS=Escherichi... [more]
TYRB_KLEPN1.492e-3437.06Tyrosine aminotransferase OS=Klebsiella pneumoniae... [more]
TYRB_PARDE3.675e-3340.74Aromatic-amino-acid aminotransferase OS=Paracoccus... [more]
PHHC_PSEAE1.307e-3038.19Aromatic-amino-acid aminotransferase OS=Pseudomona... [more]
AATM_YEAST8.207e-2536.28Aspartate aminotransferase, mitochondrial OS=Sacch... [more]
ATTY_RHIME4.979e-2232.99Tyrosine aminotransferase OS=Rhizobium meliloti GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CE11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258826 ID=DY258826; Name=DY258826; organism=Citrus clementina; type=EST; length=1215bp
CGTAAAATCACATTTATGGCCTCAACAATGCTTTCAATAGCTTCTGCAAC
TCCTTCAGCTTCGCTATCGATGCACGAGAAGCTCAAGGGCAAGGTTAAGC
TTGGAAGTACCACTAATTCGACAGCAGGATTCATTAAGACTAAATCCTTT
GGTCGAGTATCTATGGTTGCTGCTGTCAATGTTTCTCGTTTTGAGGGTGT
AACGATGGCTCCCCCCGATCCAATTCTTGGAGTTTCTGAAGCTTTTAAAG
CTGACACAGATGAAAAGAAACTCAACCTTGGAGTCGGTGCTTATCGAACC
GAAGAGCTACAGCCTTATGTGCTTGATGTTGTTAAGAAGGCAGAGAATCT
TATGCTGGAAAGGGGGGAAAACAAGGAGTATCTTCCAATTGAAGGTTTGG
CTGCATTCAATAAGGTGACAGCAGAGTTATTGTTTGGAGCTGACAACTCA
GTGCTAAAGGAACAAAGAGTTGCAACAGTTCAAGGTCTTTCAGGAACCGG
TTCTCTTCGGCTGGCTGCAGCTCTTATAGAACGATATTTTCCTGGGGCAA
AAGTACTAATATCATCTCCAACATGGGGTAACCACAAGAACATTTTCAAT
GATGCTAGAGTTCCATGGTCTGAATACCGCTACTATGATCCAAAAACAGC
GGGTTTGGATTTAGAGGGAATGATAGCAGACATAAAGGCAGCCCCTGGAG
GATCTTTTATTCTGCTTCATGGTTGGGCTCACAACCCAACTGGCATTGAT
CCAACCCCTGAAAAATGGGAAAAAATTGCTTGAGGCCATCCAAAAGAAAA
ATCATATTCCCATTTTCCGATGTTGCCCACCAGGTATGATTTCCTGGAAA
TCAAGAAAAAAAAATGAGGCCCACAAAGTCCTTCCCAACCCGGCCCCAAA
AGGAAGTTTAAAAAAATTTCAAAATTTCTTCCCGGAAAATTCAACTCTTT
GGAGGGCCCCCCCCCCAAAAAAAAAAAAAACCTTTTGAAGGAACCCTCGG
GAAATTTGACAGGGGGAACACCCCTGGACAAAGGAAGCATCCCCCCCCGG
GAAAAAGGGTTTGCCCCCCCCCGGGGCCAAGGGAACATCCCCGGGGGTCG
CCCACCCCCACCCACCAAAAAAAACCCTTGGGTCCCTCTTAATCGCAAAA
AAAGGAATGGGGAAGACAACAAAAAATGGGGGGGGCTGCTTGGTCTTCTC
CACATAAACCCAAAA
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