DY258839

Overview
NameDY258839
Unique NameDY258839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length962
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258839 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 9.001e-50
Identity = 89/175 (50.86%), Postives = 131/175 (74.86%), Query Frame = 2
Query:  137 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 658
            YD  FK++L+GDSGVGK+CLL+RF D +++  ++IST+G+DF+ + ++ DG  +KLQIWDTAGQERFR++T +YYR AH ++++YD+T+++SF+N++ WL EI  YA  +V  +L+GNK D T ++VV  E  +  A E G+PFMETSA+   NV+ AF A+A  +K R A  PS
Sbjct:   64 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPS 238          
BLAST of DY258839 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 1.176e-49
Identity = 97/202 (48.02%), Postives = 134/202 (66.34%), Query Frame = 2
Query:  137 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM------ASQPSMNNARPPTVQIKGQPVAQKSGC 724
            +DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ DN   +LVGNKCDL   +VVS E  +  A ++G  F E SAK++ NV+Q F  +   I D+M      +S P  N   P    +   P  Q S C
Sbjct:   19 FDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP---ALGDTPPPQPSSC 217          
BLAST of DY258839 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.176e-49
Identity = 97/201 (48.26%), Postives = 135/201 (67.16%), Query Frame = 2
Query:  137 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM-----ASQPSMNNARPPTVQIKGQPVAQKSGC 724
            +DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ DN   +LVGNKCDL   +VV  E  +  AD++G  F E SAK++ NV+Q F  +   I ++M      S  S +N + P V     P  Q S C
Sbjct:   19 FDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSGSNGKGPAV--GDAPAPQPSSC 217          
BLAST of DY258839 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.176e-49
Identity = 92/201 (45.77%), Postives = 139/201 (69.15%), Query Frame = 2
Query:  137 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA----SQPSMNNARPPTVQIKGQPVAQKSGCC 727
            +DY+FKLL+IG+S VGK+  L R+ADD++  +++ST+G+DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   +LVGNKCD+   +VV  E  +  A+++G  F E SAK++ +V QAF  +  +I D+M+    + PS+      T      P+ Q++  C
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDTLDTDPSLLGTSKNTRLSDTPPLLQQNCSC 219          
BLAST of DY258839 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 1.176e-49
Identity = 89/175 (50.86%), Postives = 129/175 (73.71%), Query Frame = 2
Query:  137 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 658
            YD  FK++L+GDSGVGK+CLL+RF D +++  ++IST+G+DF+ + ++ DG  +KLQIWDTAGQERFR++T +YYR AH ++++YD+T+++SF+N++ WL EI  YA  +V  +L+GNK D T  +VV  E  +  A E G+PFMETSAK   NV+ AF A+A  +K R    PS
Sbjct:   61 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTKAPS 235          
BLAST of DY258839 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.535e-49
Identity = 97/185 (52.43%), Postives = 137/185 (74.05%), Query Frame = 2
Query:  125 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPP 679
            M+ EY++LFK +L GDSGVGK+ +L R  DD++ E++I TIG++FKI+TV  +GK IKLQIWDTAG++RFR + +S+YRG HG+IIVYDVTDQ SF NV  W+ +I RYA++NV K+++GNK DL + KVV    A+ FAD + IPF E SAK S N+E+AF+++     +R+  + S+   + P
Sbjct:    1 MSKEYEHLFKFVLAGDSGVGKTSILFRITDDTFTETHI-TIGIEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVDPFLAQEFADSLDIPFKEISAKQSINIEEAFISLVKLCINRI-EETSLKKTQSP 182          
BLAST of DY258839 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.535e-49
Identity = 95/209 (45.45%), Postives = 142/209 (67.94%), Query Frame = 2
Query:  113 KSTTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQK--SGCCS 730
            +S   +P YD   K++L+GDSGVGK+C L++F D +++  ++I+T+G+D + + V  DG  +KLQIWDTAGQERFR++T +YYR A  ++++YD+T+Q SF+N++ WL EI  YA  +V  +L+GNK D+++ +V+  E  +  A E G+PFMETSAK   NVE AF+A+A  +K R   QP       P+ QI+    +QK  S CCS
Sbjct:   18 RSPPFSPNYDLTGKVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAFLAIAKELKYRAGRQPD-----EPSFQIRDYVESQKKRSSCCS 221          
BLAST of DY258839 vs. ExPASy Swiss-Prot
Match: RABG1_DICDI (Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.467e-49
Identity = 100/196 (51.02%), Postives = 136/196 (69.39%), Query Frame = 2
Query:  146 LFKLLLIGDSGVGKSCLLLRFAD-DSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQ-IKGQPVAQKSGCC 727
            +FK+LLIGDS VGK+ LLLRF D +++ E+ ++   VD+K + +  DG+T  LQIWDTAGQERFRTITSS+YRGAHG+++ YDVTDQ ++NNV  W+ EI RY    V+++LVGNKCDL   K+V+   A+ +AD +GIPF+ETSA    NVE+AFMAMA  I      +  +  ++P  V+ + G P   K   C
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGNKCDLEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEI-----YRNHIGGSKPSVVKPVCGSPPRTKKNIC 196          
BLAST of DY258839 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 193.741 bits (491), Expect = 1.300e-48
Identity = 93/209 (44.50%), Postives = 143/209 (68.42%), Query Frame = 2
Query:  113 KSTTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQK--SGCCS 730
            +S   +P YD   K++L+GD+GVGK+C L++F D +++  ++I+T+G+DF+ + V  DG  +KLQIWDTAGQERFR++T +YYR A  ++++YD+T++ SF+N++ WL EI  YA  +V  +L+GNK D+++ +V+  E  +  A E G+PF+ETSAK   NVE AF+A+A  +K R   Q     A  P+ QI+    +QK  S CCS
Sbjct:   18 RSPPCSPSYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQ-----ADEPSFQIRDYVESQKKRSSCCS 221          
BLAST of DY258839 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.782e-48
Identity = 88/175 (50.29%), Postives = 128/175 (73.14%), Query Frame = 2
Query:  137 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 658
            YD  FK++L+GDSGVGK+CLL+RF D +++  ++IST+G+DF+ + V+ DG  +KLQIWDTAGQERFR++T +YYR AH ++++YDVT++ SF++++ WL EI  +A D+V  +L+GNK D    + V  E A+  A + G+PFMETSAK   NV+ AF A+A  +K R    PS
Sbjct:   60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKELKQRHTKAPS 234          
The following BLAST results are available for this feature:
BLAST of DY258839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB26_MOUSE9.001e-5050.86Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RAB3D_RAT1.176e-4948.02GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB3D_HUMAN1.176e-4948.26Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB3B_BOVIN1.176e-4945.77Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB26_RAT1.176e-4950.86Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RABF1_DICDI1.535e-4952.43Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RAB37_MOUSE1.535e-4945.45Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RABG1_DICDI4.467e-4951.02Ras-related protein RabG1 OS=Dictyostelium discoid... [more]
RAB37_HUMAN1.300e-4844.50Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RAB26_BOVIN3.782e-4850.29Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258839 ID=DY258839; Name=DY258839; organism=Citrus clementina; type=EST; length=962bp
GTCTTCTGTTTTTGTTGACATTTAATTTCCCGGCGAAACTCATATCACGA
GATCTCGCCGAAGATAATAATCTGTTTTGGTTAACCGAACCCGAAGCTTT
TTTCTTTTACACAAATCTACGACGATGAATCCTGAATATGACTATCTGTT
TAAGCTTCTGCTTATTGGAGATTCCGGTGTTGGCAAATCTTGTCTTCTCT
TGAGATTTGCTGATGATTCATATATTGAGAGTTACATCAGCACCATAGGA
GTTGATTTTAAAATACGCACTGTTGAGCAAGATGGGAAGACCATTAAACT
TCAAATTTGGGATACTGCTGGTCAAGAAAGATTTAGGACAATCACCAGCA
GCTACTACCGTGGGGCACATGGTATCATAATTGTTTATGATGTGACAGAC
CAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACCGTTA
TGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGATCTCA
CTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGATGAA
ATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCAACGTGGA
ACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCAAGTC
AACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGGGCAG
CCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGACCAA
CACTCAGAAGATGATCCCCCTTCAGTCCCTTTGTGGTTTATGAAAAGGGC
TGTACAAAGTAGAAATGCTAATTTGATGTTAGTATTCTTCTTTCTGTCCC
TATCTTTATTGGGAATTGCCCTTAATAGCATGTTTGAATACTGTCATAAC
CCTACCTTTTGTCCGTTTTGACAGCGGTTATTGAGAACTTGACCCAATAA
TTTTGTTTATTT
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