DY258842

Overview
NameDY258842
Unique NameDY258842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1264
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258842 vs. ExPASy Swiss-Prot
Match: SUCA_YEAST (Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=LSC1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.419e-11
Identity = 43/123 (34.96%), Postives = 65/123 (52.85%), Query Frame = 3
Query:   27 IAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNK----PVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKDTFGK 383
            I +GGD FPG+   D +  F      + +++LGE+GG+ E    + LK+   ++    PV ++++GT A   K  V+ GH+GA   G    A++K QALRD G  V  S      A+ D F K
Sbjct:  206 IGMGGDAFPGTDFIDALKLFLEDETTEGIIMLGEIGGKAEIEAAQFLKEYNFSRSKPMPVASFIAGTVAGQMKG-VRMGHSGAIVEGSGTDAESKKQALRDVGVAVVESPGYLGQALLDQFAK 327          
BLAST of DY258842 vs. ExPASy Swiss-Prot
Match: SUCD1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus fulgidus GN=sucD1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.421e-11
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 3
Query:   27 IAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVV 332
            + IGGD  PG T  D +  F    + K ++++GE+GG  E    E +KQ  ++KPVVA+++G  A   K   + GHAGA   G   +A+AK  ALRDAGA V
Sbjct:  179 VGIGGDPMPGLTFVDVLKMFEEDEETKAVLLVGEIGGTAEEKAAEFIKQ--MSKPVVAFIAGRTAPPGK---RMGHAGAIIEGSTGTAEAKMAALRDAGARV 275          
BLAST of DY258842 vs. ExPASy Swiss-Prot
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.421e-11
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 3
Query:   27 IAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKDTF 377
            + IGGD F G+   D + +F + PQ + +V++GE+GG  E      +++ K  KPVVA+++G  A   +   + GHAGA   G   +AQ K +ALR+AG  V  S     S + + F
Sbjct:  211 VGIGGDPFNGTNFVDCLEKFVDDPQTEGIVLIGEIGGTAEEDAAAFIQESKTQKPVVAFIAGLTAPPGR---RMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGSTMFEIF 324          
BLAST of DY258842 vs. ExPASy Swiss-Prot
Match: SUCD_RICCN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia conorii GN=sucD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.130e-11
Identity = 41/119 (34.45%), Postives = 62/119 (52.10%), Query Frame = 3
Query:   27 IAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKDTFGK 383
            I IGGD   G+   D I  F    + K ++++GE+GG  E    E +KQ K+ KP+V++++G  A   K   + GHAGA   G   SA+ K +AL+ AG ++  S       + D   K
Sbjct:  176 IGIGGDPVNGTNFVDCIEMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITAPPGK---RMGHAGAIIVGRTGSAEDKLEALQSAGVIITRSPADIGKTMLDLLNK 291          
BLAST of DY258842 vs. ExPASy Swiss-Prot
Match: SUCD_RICTY (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia typhi GN=sucD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.394e-11
Identity = 39/120 (32.50%), Postives = 64/120 (53.33%), Query Frame = 3
Query:   27 IAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKDTFGKL 386
            I IGGD   G++  + I  F    + K ++++GE+GG  E    + +KQ K+ KP+V++++G  A    S+ + GHAGA   G   SA+ K +AL+ AG  +  S       + D   K+
Sbjct:  176 IGIGGDPVNGTSFVECIEMFLQDDETKAIIMIGEIGGNAEEDAADFIKQSKIKKPIVSFIAGITA---PSDKRMGHAGAIISGGKGSAKDKLEALQSAGVTITKSPADIGKTMLDLLNKI 292          
BLAST of DY258842 vs. ExPASy Swiss-Prot
Match: SUCD_RICPR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia prowazekii GN=sucD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.045e-11
Identity = 37/120 (30.83%), Postives = 64/120 (53.33%), Query Frame = 3
Query:   27 IAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKDTFGKL 386
            + IGGD   G++  D I  F    + K ++++GE+GG  E    + +KQ K+ KP+V++++G  A    ++ + GHAGA   G   SA+ K + L+ AG ++  S       + D   K+
Sbjct:  176 VGIGGDPVNGTSFVDCIEMFLQDDETKAIIMIGEIGGSAEEDAADFIKQSKIKKPIVSFIAGITA---PADKRMGHAGAIISGGKGSAEDKVEVLQSAGVIITRSPADIGKTMLDLLNKI 292          
BLAST of DY258842 vs. ExPASy Swiss-Prot
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.201e-11
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 3
Query:   27 IAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKDTF 377
            + IGGD F G+   D + +F   PQ + +V++GE+GG  E      +K+   +KPVVA+++G  A   +   + GHAGA   G   +AQ K ++LRDAG  V  S     +A+ + F
Sbjct:  221 VGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENGTDKPVVAFIAGLTAPPGR---RMGHAGAIVSGGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFELF 334          
The following BLAST results are available for this feature:
BLAST of DY258842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SUCA_YEAST1.419e-1134.96Succinyl-CoA ligase [ADP-forming] subunit alpha, m... [more]
SUCD1_ARCFU2.421e-1142.16Succinyl-CoA ligase [ADP-forming] subunit alpha 1 ... [more]
SUCA_ORYSJ2.421e-1135.90Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_RICCN4.130e-1134.45Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICTY5.394e-1132.50Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICPR7.045e-1130.83Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA2_ARATH9.201e-1135.90Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CH03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258842 ID=DY258842; Name=DY258842; organism=Citrus clementina; type=EST; length=1264bp
GTGTAACAGATCTTTTCTATGAAGGTATTGCAATTGGAGGAGATGTGTTC
CCTGGCTCCACTCTTTCTGATCACATTTTGCGGTTTAACAACATCCCACA
GGTTAAAATGATGGTTGTTCTTGGTGAACTTGGAGGACGGGATGAGTACT
CCCTTGTTGAAGCTCTGAAACAGGGAAAGGTAAACAAACCTGTGGTTGCA
TGGGTCAGTGGAACCTGTGCTCGACTATTCAAATCAGAAGTGCAATTTGG
TCATGCTGGTGCTAAAAGTGGTGGTGAGATGGAGTCTGCTCAGGCAAAGA
ATCAAGCACTAAGGGATGCTGGAGCTGTTGTTCCTACTTCATATGAAGCC
TTTGAATCTGCAATTAAGGATACATTTGGGAAACTTGTTGAAGAGGGGAA
GATTCCACCAGTGAAGGAAGTTACACCACCACAAATCCCTGAGGATCTTA
ACACTGCCATTAAGAGTGGGAAAGTACGGGCTCCAACTCATATTATTTCA
ACCATCTCTGATGACAGAGGTGAGGAGCCATGCTATGCTGGTGTACCAAT
GTCTTCAATTGTAGAACAAGGTTATGGTGTGGGTGATGTTATTTCCCTTT
TGTGGTTTAAACGCAGCCTTCCCCGCTACTGTACCCAATTTATTGAGATA
TGCATAATGTTATGCGCTGATCATGGCCCCTGTGTTTCTGGTGCTCACAA
CACTATAGTGACAGCAAGAGCTGGAAAGGATCTTGTTTCCAGCCTCGTGT
CAGGTTTGCTCACAATTGGGCCCCGATTTGGTGGGCCCATTGATGAAGCT
GCCCGATTTTTCAAGGAAGCCTATGACCGGGGGCCTTTCCCCCTAATAAT
TTGTTGAAACAAAGAAAAAAGAAGGGCATACCTGTGCCCAGGAATTGGGC
CAAAGAATCAAAAAAAGGAAAAAACAAAAACAAAAAAAGGGGGAACCGCC
AACAAAAATTTTCCCCCCCCCCCTTTTTCCCTTTTGGGGAAAGAATATGG
AAAAATGCCGTGTTCAAGTTTAAAAACCCCTCCCCCCCAATCAAAAAACA
AAACAAACCCCGGGGCTTTCTTAAATGAAAAAAGGTGGGCAATATTTTGG
CCCCCCCTTTTTTTTTTTGGGATCCTTTCTTGGCGTGGGGGGCGGGGGGA
AAAATGTTCTCCACCAAACCACAACAAAAAAATACCCAAAAAAAAAAAAA
ATAGGGGGGAAAAAAAATTGTGGAATAAATATTTTTTAAAAAAGGGGGGG
GGGCCTCCCCTTCC
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