DY258860

Overview
NameDY258860
Unique NameDY258860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length941
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.347e-34
Identity = 85/223 (38.12%), Postives = 125/223 (56.05%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP-------LLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 648
            R  +  +MGK T+  + +   A+    +              LL GN GLIFT   +               ARVG ++P DV+V  G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +     +S V A+AL    PT +    M V+A+KN++AV++AT Y F +
Sbjct:   46 RAKAEFMMGKKTLQGKIVEKRAQAKDASPEAKHFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDAHRVKRAARVGAISPCDVIVAAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 268          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.654e-33
Identity = 77/219 (35.16%), Postives = 124/219 (56.62%), Query Frame = 1
Query:    4 GDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKV 660
            G++ +LMGKN+ ++R I       G      +  L++G+V  +F KG+              A A+VG VA  DV V    TG+ P +TS+FQ L I TKI KG VEII+P +++ +GDKVG S+A LL  L I+PF Y + +  +YE+G +Y   ++D+ E+D+     +++S V A +L     T A+ P+   NA+K+++ V+L  ++   +   V
Sbjct:   73 GNAELLMGKNSAIRRAIA----DLGKPELSGVYDLVKGDVCFVFFKGNARDIKKAIDENVREACAKVGNVAQRDVWVESCITGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCYKMTMHQIYEDGVIYDSSLIDIGEEDIFTSLRNAISTVAAASLGAGVITQASMPYNVRNAFKDILHVSLGADFMIKEQSMV 287          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.546e-25
Identity = 70/208 (33.65%), Postives = 108/208 (51.92%), Query Frame = 1
Query:    7 DSVVL-MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVAL 624
            DS+ L M +NT+MKR I   AE+TGN +F  LI  ++    LI T+ +              AP + G  AP D+ +  G+TG+ P    S  + + +P  I KG + I     + ++GD V +  A +L+KL I+P   GL V  VYE+G VY PE+L + ED+ + K  S+ +    L++    PT A    +   A+ N  AV++
Sbjct:   53 DSMTLKMSRNTLMKRAIEEVAEETGNPSFTKLIDCMEKGAALIATEMNPFKLYKTLNESKSPAPIKAGATAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVLSKLDIKPMEVGLNVLGVYEDGIVYDPEILKIDEDEFLAKLQSAYTGAFNLSVNAVIPTSATIETIVQKAFSNAKAVSI 260          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.635e-22
Identity = 63/217 (29.03%), Postives = 105/217 (48.39%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 648
            RG +++ + +NT+++  I+  A++ G      LI  +QG  G++ T+ +              APA+ G+  P DVV+P G T + P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+G VY+PEVL + E++ +     +      L++  +YPT      +   AY     VA+   Y  P+
Sbjct:   46 RGKALLRVSRNTLIELAIKRAAQELGKPELEKLIDHIQGGAGILATEMNPFKLYKLLEESKTPAPAKPGVPVPRDVVIPAGPTSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPEVLAIDEEEYINLLQQAYMHAFNLSVNTAYPTSQTIEAIIQKAYLGAKNVAVEAGYITPE 262          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_METTL (Acidic ribosomal protein P0 homolog OS=Methanococcus thermolithotrophicus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.495e-22
Identity = 62/213 (29.11%), Postives = 106/213 (49.77%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 636
            RG   + M +NT+++R I+  AE+TGN  F  L   +     +I T  +              AP + G VAP D+ V  G+TG+ P       + + IP  I KG + I     + + G+ V    A +L+ LGI+P + GL + + YE+G +Y+P+VL + E++ V+K   + S    L++  + PT      +   A+ N  AV++ + +
Sbjct:   52 RGTMTLKMSRNTLIERAIKEVAEETGNPEFAKLADYIDKGAAIITTDMNPFKLYKTLEESKSPAPIKGGAVAPCDIEVKAGSTGMPPGPFLGELKSVGIPAAIEKGKIGIKEDKVVAKAGEVVSHKLAVVLSALGIKPVTVGLNLLAAYEDGVIYTPDVLKIDEEEFVQKIQDAYSKAFNLSVNAAIPTAQTIETLLQKAFANARAVSIESAF 264          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_PYRKO (Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.667e-22
Identity = 63/213 (29.58%), Postives = 102/213 (47.89%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 636
            RG +++ + +NT+++  I+  A++ G      LI  +QG   ++ T+ +              APA+ G V P DVV+P G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+G VY+P+VL + E + +     +      L++ I+YPT      +   AY     VA+   Y
Sbjct:   46 RGKALLRVSRNTLIELAIKRAAQELGQPELEKLIDHIQGGAAILATEMNPFKLYKLLEESKTPAPAKAGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPDVLAIDESEYINMLQKAYMHAFNLSVNIAYPTKQTIEAILQKAYLGAKNVAVEAGY 258          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_THESM (Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.708e-21
Identity = 63/213 (29.58%), Postives = 104/213 (48.83%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 636
            R  +V+ + +NT+++  ++  A++  ++    LI  +QG  G++ TK +              APA+ G  AP DVVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L +LGI P   GL + + YE+G VY+PEVL + E+  +     +      L++ ++YPT      +   A+     VA+   Y
Sbjct:   46 RDKAVLRVSRNTLIELALKKAAQELNDSNLEKLIEHIQGGTGILVTKINPFKLYKFLEESKKPAPAKAGAPAPRDVVVPAGPTPLSPGPLVGEMQALGIPARIEKGKVSIQKDTVVLKAGEIITPQLANILNQLGIEPLEVGLKLLAAYEHGIVYTPEVLAIDEEQYISMLQQAYMHAFNLSVNVAYPTKQTIEAIIQKAFLGAKNVAVEAGY 258          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_METVS (Acidic ribosomal protein P0 homolog OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rplP0 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.231e-21
Identity = 60/213 (28.17%), Postives = 106/213 (49.77%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 636
            R    + M +NT++KR +   AE+TGN  F  L+  L     ++ T+ +              AP + G +AP D+ V  G+TG+ P    S  + + IP  I+KG + I     + ++GD +    A +L+ LGI+P + GL V  VYE G +Y+ +VL + E++ + K   + +    L++    PT A    +   A+ +  AV++ + +
Sbjct:   52 RDQMTLKMSRNTLIKRAVEEVAEETGNPEFAKLVDYLDKGAAIVVTEMNPFKLFKTLEESKSPAPIKGGAIAPCDIEVKSGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVAKEGDVISPKLAVVLSALGIKPVTVGLNVLGVYEEGVIYTSDVLRIDEEEFLGKLQKAYTNAFNLSVNAVIPTSATIETIVQKAFNDAKAVSVESAF 264          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_METM5 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.231e-21
Identity = 59/213 (27.70%), Postives = 106/213 (49.77%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 636
            R    + M +NT+MKR I   AE+TGN  F  L+  +     +I T+ +              AP + G VAP D+ +  G+TG+ P    S  + + +P  I+KG + I     ++++G+ V    + +L+ LGI+P + GL V  VYE+G +Y+   L + E++ + K   + +    L++    PT A    +   A+ +  AV++ + +
Sbjct:   52 RDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLVDYMDKGAAIIATEMNPFKLYKTLDESKSPAPVKGGAVAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIDKGKIGIKEDTVVVKEGEVVSQKLSVVLSALGIKPVTVGLNVLGVYEDGIIYTESDLKIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_METM6 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.913e-21
Identity = 63/213 (29.58%), Postives = 104/213 (48.83%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 636
            R    + M +NT+MKR I   AE+TGN  F  L   L     +I T+ +              AP + G  AP D+ V  G+TG+ P    S  + + IP  I+KG + I     +I++G+ V    A +L+ LGI+P + GL V  VYE+G +Y+   L + E++ + K   + +    L++    PT A    +   A+ +  AV++ + +
Sbjct:   52 RDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLADYLDKGAAIIATEMNPFKLFKTLDESKSPAPVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVIKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDGVIYTESELRIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264          
The following BLAST results are available for this feature:
BLAST of DY258860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RLA0_LEIIN1.347e-3438.1260S acidic ribosomal protein P0 OS=Leishmania infa... [more]
RLA0_ENCCU9.654e-3335.1660S acidic ribosomal protein P0 OS=Encephalitozoon... [more]
RLA0_METVO2.546e-2533.65Acidic ribosomal protein P0 homolog (Fragment) OS=... [more]
RLA0_THEON2.635e-2229.03Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_METTL4.495e-2229.11Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_PYRKO7.667e-2229.58Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_THESM1.708e-2129.58Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_METVS2.231e-2128.17Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METM52.231e-2127.70Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METM62.913e-2129.58Acidic ribosomal protein P0 homolog OS=Methanococc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258860 ID=DY258860; Name=DY258860; organism=Citrus clementina; type=EST; length=941bp
CGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTATGATGAAGAGGAC
TATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCA
TCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTG
AAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCG
TGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAG
GTCTCGACCCCTCCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACC
AAGATTAACAAGGGTACTGTTGAAATTATCACACCTGTGGAGCTTATTAG
GAAGGGTGACAAGGTGGGATCTTCTGAGGCAGCCCTGCTTGCAAAGCTTG
GGATTAGACCCTTCTCTTATGGTCTTGTTGTCCAGTCTGTCTATGAAAAC
GGTTCCGTCTACAGCCCAGAGGTCCTTGACCTGTCTGAAGATGACCTAGT
GGAGAAGTTCGCCTCAAGTGTATCAATGGTCACCGCTCTGGCACTTGCCA
TCTCATACCCGACCCTGGCAGCTGCTCCACACATGTTCGTCAATGCATAC
AAGAATGTGGTTGCTGTTGCTCTTGCAACTGAGTATTCATTCCCTCAGGC
CGACAAAGTGAAGGAGTACCTGGCGGACCCAAGCAAGTTTGCTGTTGCTG
CTGCCCCGGTTGCTGGCGGTGGTGATGCCCCAGCTGCTGCTGCAAAGGAG
GAAGAGAAGAAGGAAGAGCCTGCTGAGGAGTCTGATGAAGATATGGGCTT
CAGCTTGTTCGACTAAGTGCACTGTCATTTGTGCTATAACTTAGGATTTT
GACGTTTATGGGTATGTTTGCTTTATTTTCTTAATGCTTTTTGTAGACTC
AGTTTCCCTTTTTATTTTATAAAATCTTTTATTTAGGAACA
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