DY258860

Overview
NameDY258860
Unique NameDY258860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length941
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_PYRHO (Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii GN=rplP0 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.805e-21
Identity = 63/206 (30.58%), Postives = 99/206 (48.06%), Query Frame = 1
Query:   22 MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 636
            + +NT+++  I+  A++ G      L+  +    G++ T  +              APA+ G V P DVVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++    +      LA+ I+YPT      +   A+ N   VA+   Y
Sbjct:   54 VSRNTLIELAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEAGY 259          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_PYRFU (Acidic ribosomal protein P0 homolog OS=Pyrococcus furiosus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.970e-21
Identity = 60/211 (28.44%), Postives = 104/211 (49.29%), Query Frame = 1
Query:    7 DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 636
            + ++ + +NT+++  I+  A++ G      LI  ++G  G++ T  +              APA+ G   P DVV+P G T L P       Q + IP +I +G V I     +++ G+++    A +L  LGI+P   GL + +VYE+G +Y+P+VL + E + +     +      LA+ I+YPT      +   A+ N  AVA+   Y
Sbjct:   49 NGLLRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVEAGY 259          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_METM7 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.970e-21
Identity = 62/213 (29.11%), Postives = 104/213 (48.83%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 636
            R    + M +NT+MKR I   AE+TGN  F  L   L     +I T+ +              AP + G  AP D+ V  G+TG+ P    S  + + IP  I+KG + I     ++++G+ V    A +L+ LGI+P + GL V  VYE+G +Y+   L + E++ + K   + +    L++    PT A    +   A+ +  AV++ + +
Sbjct:   52 RDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLADYLDKGAAIIATEMNPFKLFKTLDESKSPAPVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVVKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDGVIYTESDLKIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATIETIVQKAFNDAKAVSVESAF 264          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_METMP (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.490e-21
Identity = 61/213 (28.64%), Postives = 105/213 (49.30%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 636
            R    + M +NT+MKR I   AE+TGN  F  L+  +     +I T+ +              AP + G +AP D+ V  G+TG+ P    S  + + IP  I+KG + I     ++++G+ V    A +L+ L I+P + GL V  VYE+G +Y+   L + E++ V K   + +    L++    PT A    +   A+ +  AV++ + +
Sbjct:   52 RDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLVDYMDKGAAIIATEMNPFKLYKTLDESKSPAPVKGGAIAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKIVVKEGEVVSQKLAVVLSALDIKPVTVGLNVLGVYEDGVIYTESDLKIDEEEFVGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_METJA (Acidic ribosomal protein P0 homolog OS=Methanocaldococcus jannaschii GN=rplP0 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.446e-20
Identity = 63/219 (28.77%), Postives = 106/219 (48.40%), Query Frame = 1
Query:   22 MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLA 675
            M +NT++ R ++  AE+  N     L   ++    ++ T  +              AP R G +AP D+ V  G+TG+ P       + + IP  I KG + I     +++KG+ V    AA+L +LGI+P   GL + +VYE+G +Y+P+VL + E+ L+    ++      LA   +YP     P +   A+ N  A AL+ E +F   +   + LA
Sbjct:   58 MSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLADIQAAYQNAFNLAFNTAYPAKEVLPFLIQKAFIN--ARALSVETAFVTKETAGDILA 274          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_PYRAB (Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi GN=rplP0 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.466e-20
Identity = 61/206 (29.61%), Postives = 99/206 (48.06%), Query Frame = 1
Query:   22 MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 636
            + +NT+++  I+  A++ G      L   +    G++ T  +              APA+ G V P DVV+P G T L P       Q + IP +I +G V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++    +      LA+ I+YPT      +   A+ N  AVA+   Y
Sbjct:   54 VSRNTLIELAIKKAAQELGKPELEKLAEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVIPAGPTPLAPGPIVGQMQAMGIPARIERGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMVQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKAVAVEAGY 259          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_NATPD (Acidic ribosomal protein P0 homolog OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.224e-19
Identity = 60/215 (27.91%), Postives = 102/215 (47.44%), Query Frame = 1
Query:    4 GDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFP 645
            G + + + +NT+M+R +    +  G      L+  ++G VGLI T  +              AP   G VAP D+V+P G+TG+DP       Q +    +I  G+++++    ++  G++V S  + +L++LGI P   GL ++ V   G ++SPE LD+  +       S+ S    L++   YPT   AP M   A     +V L+     P
Sbjct:   54 GTAALRVSRNTLMERALNEGGDGLGE-----LVEHVEGQVGLIGTNDNPFGLYQQLEESKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGDLQQVGANARIEGGSIKVVEDSTVLSAGEEVSSDLSNVLSELGIEPKEVGLDLRGVSSEGVLFSPEELDIDVESYRTDIESAASAARNLSVNAEYPTARTAPSMLAKAAGEAKSVGLSAAVESP 263          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_META3 (Acidic ribosomal protein P0 homolog OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.599e-19
Identity = 55/206 (26.70%), Postives = 102/206 (49.51%), Query Frame = 1
Query:   22 MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 636
            M +NT++KR I   AE++ +  F  L   L+    ++ T  +              AP + G +AP D+VV  G+TG+ P       +   +P  I+KG + I     ++++G+ V    A +L+ LGI+P   GL + + YE+G VY+ +VL + E++ V+   S+ +    L++  + PT      +   A+    AV++ + +
Sbjct:   58 MSRNTLIKRAIEELAEESNDPKFAKLAECLERGAAIVITDMNPFKLYKTLEDGKAPAPIKAGAIAPSDIVVEAGSTGMPPGPFLGELKGAGLPAVIDKGKIAIKDDTVIVKEGEVVSPKVAVVLSALGIKPTKVGLDLLAAYEDGIVYTSDVLKIDEEEFVQNIQSAFTSAFNLSVNAAIPTTETIETILQKAFTEAKAVSIESAF 263          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_THEGJ (Acidic ribosomal protein P0 homolog OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.651e-19
Identity = 58/217 (26.73%), Postives = 100/217 (46.08%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 648
            RG +++ + +NT+++  I+  A++        L   ++G   ++ T+ +              APA+ G V P DVV+P G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+  +Y+P+VL + E + +     +      L++  +YPT      +   AY     VA+   Y  P+
Sbjct:   46 RGKALLRVSRNTLIELAIKRAAQELNKPDLEKLADYIEGGAAILATEMNPFKLYKLLEESKTPAPAKPGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVTIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDDIIYTPDVLAIDEQEYINMLQQAYMHAFNLSVNTAYPTKQTIEAIIQKAYLGAKNVAVEAGYITPE 262          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_HALSA (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarium GN=rplP0 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.717e-18
Identity = 55/215 (25.58%), Postives = 102/215 (47.44%), Query Frame = 1
Query:    4 GDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFP 645
            G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP G+TG+DP       Q +    +I +G+++++    +  +G+ V    + +L++LGI P   GL ++ V+  G +++PE L++  D+      S+ +    L++  +YPT   AP +         ++ L      P
Sbjct:   55 GQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEPKEVGLDLRGVFSEGVLFTPEELEIDVDEYRADIQSAAASARNLSVNAAYPTERTAPDLIAKGRGEAKSLGLQASVESP 264          
The following BLAST results are available for this feature:
BLAST of DY258860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RLA0_PYRHO3.805e-2130.58Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_PYRFU4.970e-2128.44Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_METM74.970e-2129.11Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METMP6.490e-2128.64Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METJA1.446e-2028.77Acidic ribosomal protein P0 homolog OS=Methanocald... [more]
RLA0_PYRAB2.466e-2029.61Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_NATPD1.224e-1927.91Acidic ribosomal protein P0 homolog OS=Natronomona... [more]
RLA0_META31.599e-1926.70Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_THEGJ4.651e-1926.73Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_HALSA6.717e-1825.58Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258860 ID=DY258860; Name=DY258860; organism=Citrus clementina; type=EST; length=941bp
CGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTATGATGAAGAGGAC
TATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCA
TCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTG
AAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCG
TGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAG
GTCTCGACCCCTCCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACC
AAGATTAACAAGGGTACTGTTGAAATTATCACACCTGTGGAGCTTATTAG
GAAGGGTGACAAGGTGGGATCTTCTGAGGCAGCCCTGCTTGCAAAGCTTG
GGATTAGACCCTTCTCTTATGGTCTTGTTGTCCAGTCTGTCTATGAAAAC
GGTTCCGTCTACAGCCCAGAGGTCCTTGACCTGTCTGAAGATGACCTAGT
GGAGAAGTTCGCCTCAAGTGTATCAATGGTCACCGCTCTGGCACTTGCCA
TCTCATACCCGACCCTGGCAGCTGCTCCACACATGTTCGTCAATGCATAC
AAGAATGTGGTTGCTGTTGCTCTTGCAACTGAGTATTCATTCCCTCAGGC
CGACAAAGTGAAGGAGTACCTGGCGGACCCAAGCAAGTTTGCTGTTGCTG
CTGCCCCGGTTGCTGGCGGTGGTGATGCCCCAGCTGCTGCTGCAAAGGAG
GAAGAGAAGAAGGAAGAGCCTGCTGAGGAGTCTGATGAAGATATGGGCTT
CAGCTTGTTCGACTAAGTGCACTGTCATTTGTGCTATAACTTAGGATTTT
GACGTTTATGGGTATGTTTGCTTTATTTTCTTAATGCTTTTTGTAGACTC
AGTTTCCCTTTTTATTTTATAAAATCTTTTATTTAGGAACA
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