DY258860

Overview
NameDY258860
Unique NameDY258860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length941
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_METBF (Acidic ribosomal protein P0 homolog OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.506e-13
Identity = 49/198 (24.75%), Postives = 84/198 (42.42%), Query Frame = 1
Query:   10 SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAY 600
            +V+ + +N++ +R +    E     +   +   L     L+FT                 +P + G +AP D++V  G T   P       Q   IP  I+ G V +     + + G+ V    A +L KL I P   GL +++VY+NG++Y PE+L + E         +      LA+  +YPT A    +   A+
Sbjct:   56 AVLKVSRNSLTERALNQLGE-----SIPEMNKYLDKQTALVFTNESPFKLYKVLEQTKTPSPIKGGAIAPADIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEVVSQKLATMLTKLEIYPLIVGLDLRAVYDNGAIYEPELLAIDESQYFSDITRAAQSAFNLAVNTAYPTSATIGTLLAKAF 248          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_METMA (Acidic ribosomal protein P0 homolog OS=Methanosarcina mazei GN=rplP0 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.472e-12
Identity = 49/198 (24.75%), Postives = 84/198 (42.42%), Query Frame = 1
Query:   10 SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAY 600
            +V+ + +NT+ +R +    E     +   +   L     LIFT                 +P + G +AP D++V  G T   P       Q   IP  I+ G V +     + + G+ V    A +L+KL I P   GL +++ Y++G++Y PE+L + E         +      L++  +YPT A    +   AY
Sbjct:   56 AVLKVSRNTLTERALNQLGE-----SIPEMTRYLDNQTALIFTNESPFKLYKLLEQTKTPSPIKAGAIAPEDIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEAVPQKLATMLSKLEIYPLIVGLDLRAAYDDGTIYEPELLAVDESKYFSDIIRAAQNAFNLSVNTAYPTGATIGTLLAKAY 248          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_SULSO (Acidic ribosomal protein P0 homolog OS=Sulfolobus solfataricus GN=rplP0 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.229e-12
Identity = 58/218 (26.61%), Postives = 87/218 (39.91%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQA 651
            RG + + + KNT+ K      A K        L   L G    IFTK +                A  G  A  +VV+P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V   E L L  +        +      LA+ I+YPT           +KN +A+A    Y  P++
Sbjct:   55 RGKATIKVTKNTLFKI-----AAKNAGIDIEKLEQYLTGPNVFIFTKDNPFITNMFFENYKLRRYAMPGDKAEEEVVIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPAEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAESLKLDLEGYRSNITEAYRNAFTLAVEIAYPTPDVLKFTISKVFKNAIALASEIGYITPES 267          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_SULIA (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain M.16.27) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.217e-12
Identity = 57/218 (26.15%), Postives = 89/218 (40.83%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQA 651
            RG +++ + KNT+ K      A K        L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V   E L L+ +      A +      LA+ I+YP            +KN +A+A    Y  P++
Sbjct:   55 RGKAIIKVTKNTLFKI-----AAKNAGINTEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAENLKLNLEGYRSNIAEAYRNAFTLAVEIAYPVPDVLKFTISKVFKNAIALASEIGYLTPES 267          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_METBU (Acidic ribosomal protein P0 homolog OS=Methanococcoides burtonii (strain DSM 6242) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.507e-12
Identity = 43/147 (29.25%), Postives = 70/147 (47.62%), Query Frame = 1
Query:  127 LIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPT 564
            LIFTK +              +P + G+VA  D++V  G T   P       Q   IP  I+ G V I     + + G+ V    AA+L +L I P   GL +++V E GS+++P+VL + E+ +   F  +      +++  +YPT
Sbjct:   89 LIFTKQNPFKLYKLLEKSKTPSPIKAGMVATSDIIVEKGPTSFPPGPILGDMQGAGIPAAIDGGKVVIKETKAVAKAGEVVSQKLAAMLTRLEIYPLEVGLDLRAVLEEGSIFTPDVLAIDEEQIFSNFVQAAQQAFNMSVNAAYPT 235          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_SULIY (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.394e-12
Identity = 56/218 (25.69%), Postives = 89/218 (40.83%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQA 651
            RG +++ + KNT+ K      A K    +   L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V   E L L+ +      A +      LA+ I+YP            +KN + +A    Y  P++
Sbjct:   55 RGKAIIKVTKNTLFKI-----AAKNAGISTEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAENLKLNLEGYRSNIAEAYRNAFTLAVEIAYPVPDVLKFTINKIFKNAITLASEIGYLTPES 267          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_SULIN (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.394e-12
Identity = 56/218 (25.69%), Postives = 89/218 (40.83%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQA 651
            RG +++ + KNT+ K      A K    +   L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V   E L L+ +      A +      LA+ I+YP            +KN + +A    Y  P++
Sbjct:   55 RGKAIIKVTKNTLFKI-----AAKNAGISTEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAENLKLNLEGYRSNIAEAYRNAFTLAVEIAYPVPDVLKFTINKIFKNAITLASEIGYLTPES 267          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_SULIL (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.394e-12
Identity = 56/218 (25.69%), Postives = 89/218 (40.83%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQA 651
            RG +++ + KNT+ K      A K    +   L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V   E L L+ +      A +      LA+ I+YP            +KN + +A    Y  P++
Sbjct:   55 RGKAIIKVTKNTLFKI-----AAKNAGISTEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAENLKLNLEGYRSNIAEAYRNAFTLAVEIAYPVPDVLKFTINKIFKNAITLASEIGYLTPES 267          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_ARCFU (Acidic ribosomal protein P0 homolog OS=Archaeoglobus fulgidus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.394e-12
Identity = 51/209 (24.40%), Postives = 97/209 (46.41%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVAL 624
            RG + + + KNT+++R +    +  G   +L L   L   + +I    +              +P +   V+P+DVVV  G T + P    +  Q+  +P  I KG V +     +++ G+ V    A  L +L I+P   GL V+++ ++G + +PE L +  + ++E F  +  M   LA+  +Y T   A  + + A  +   +A+
Sbjct:   50 RGKAEIKVVKNTLLERAL----DALGGD-YLKLKDYLGDQIAIITADENPFRLFRMIEDTKVPSPLKPNQVSPVDVVVNEGPTPIPPGPLMAELQMAGLPVAIEKGKVVVKATTTVVKAGEVVRPEVARALERLDIKPIKIGLDVKAMLDSGVILTPETLAIDTEKVLEDFQRAYQMALNLAVNSAYVTEETAEILIMKAVMDARNLAI 253          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_SULIM (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.227e-11
Identity = 56/218 (25.69%), Postives = 88/218 (40.37%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQA 651
            RG +++ + KNT+ K      A K        L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V   E L L+ +      A +      LA+ I+YP            +KN + +A    Y  P++
Sbjct:   55 RGKAIIKVTKNTLFKI-----AAKNAGINIEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAENLKLNLEGYRSNIAEAYRNAFTLAVEIAYPVPDVLKFTINKIFKNAITLASEIGYLTPES 267          
The following BLAST results are available for this feature:
BLAST of DY258860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RLA0_METBF6.506e-1324.75Acidic ribosomal protein P0 homolog OS=Methanosarc... [more]
RLA0_METMA2.472e-1224.75Acidic ribosomal protein P0 homolog OS=Methanosarc... [more]
RLA0_SULSO3.229e-1226.61Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_SULIA4.217e-1226.15Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_METBU5.507e-1229.25Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_SULIY9.394e-1225.69Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_SULIN9.394e-1225.69Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_SULIL9.394e-1225.69Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_ARCFU9.394e-1224.40Acidic ribosomal protein P0 homolog OS=Archaeoglob... [more]
RLA0_SULIM1.227e-1125.69Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258860 ID=DY258860; Name=DY258860; organism=Citrus clementina; type=EST; length=941bp
CGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTATGATGAAGAGGAC
TATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCA
TCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTG
AAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCG
TGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAG
GTCTCGACCCCTCCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACC
AAGATTAACAAGGGTACTGTTGAAATTATCACACCTGTGGAGCTTATTAG
GAAGGGTGACAAGGTGGGATCTTCTGAGGCAGCCCTGCTTGCAAAGCTTG
GGATTAGACCCTTCTCTTATGGTCTTGTTGTCCAGTCTGTCTATGAAAAC
GGTTCCGTCTACAGCCCAGAGGTCCTTGACCTGTCTGAAGATGACCTAGT
GGAGAAGTTCGCCTCAAGTGTATCAATGGTCACCGCTCTGGCACTTGCCA
TCTCATACCCGACCCTGGCAGCTGCTCCACACATGTTCGTCAATGCATAC
AAGAATGTGGTTGCTGTTGCTCTTGCAACTGAGTATTCATTCCCTCAGGC
CGACAAAGTGAAGGAGTACCTGGCGGACCCAAGCAAGTTTGCTGTTGCTG
CTGCCCCGGTTGCTGGCGGTGGTGATGCCCCAGCTGCTGCTGCAAAGGAG
GAAGAGAAGAAGGAAGAGCCTGCTGAGGAGTCTGATGAAGATATGGGCTT
CAGCTTGTTCGACTAAGTGCACTGTCATTTGTGCTATAACTTAGGATTTT
GACGTTTATGGGTATGTTTGCTTTATTTTCTTAATGCTTTTTGTAGACTC
AGTTTCCCTTTTTATTTTATAAAATCTTTTATTTAGGAACA
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