DY258860

Overview
NameDY258860
Unique NameDY258860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length941
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_SULIK (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.227e-11
Identity = 56/218 (25.69%), Postives = 88/218 (40.37%), Query Frame = 1 
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQA 651
            RG +++ + KNT+ K      A K        L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V   E L L+ +      A +      LA+ I+YP            +KN + +A    Y  P++
Sbjct:   55 RGKAIIKVTKNTLFKI-----AAKNAGINIEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAENLKLNLEGYRSNIAEAYRNAFTLAVEIAYPVPDVLKFTINKIFKNAITLASEIGYLTPES 267
The following BLAST results are available for this feature:
BLAST of DY258860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RLA0_SULIK1.227e-1125.69Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3DB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258860 ID=DY258860; Name=DY258860; organism=Citrus clementina; type=EST; length=941bp
CGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTATGATGAAGAGGAC
TATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCA
TCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTG
AAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCG
TGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAG
GTCTCGACCCCTCCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACC
AAGATTAACAAGGGTACTGTTGAAATTATCACACCTGTGGAGCTTATTAG
GAAGGGTGACAAGGTGGGATCTTCTGAGGCAGCCCTGCTTGCAAAGCTTG
GGATTAGACCCTTCTCTTATGGTCTTGTTGTCCAGTCTGTCTATGAAAAC
GGTTCCGTCTACAGCCCAGAGGTCCTTGACCTGTCTGAAGATGACCTAGT
GGAGAAGTTCGCCTCAAGTGTATCAATGGTCACCGCTCTGGCACTTGCCA
TCTCATACCCGACCCTGGCAGCTGCTCCACACATGTTCGTCAATGCATAC
AAGAATGTGGTTGCTGTTGCTCTTGCAACTGAGTATTCATTCCCTCAGGC
CGACAAAGTGAAGGAGTACCTGGCGGACCCAAGCAAGTTTGCTGTTGCTG
CTGCCCCGGTTGCTGGCGGTGGTGATGCCCCAGCTGCTGCTGCAAAGGAG
GAAGAGAAGAAGGAAGAGCCTGCTGAGGAGTCTGATGAAGATATGGGCTT
CAGCTTGTTCGACTAAGTGCACTGTCATTTGTGCTATAACTTAGGATTTT
GACGTTTATGGGTATGTTTGCTTTATTTTCTTAATGCTTTTTGTAGACTC
AGTTTCCCTTTTTATTTTATAAAATCTTTTATTTAGGAACA
back to top