DY258863

Overview
NameDY258863
Unique NameDY258863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1213
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: HUL4_ASHGO (Probable E3 ubiquitin-protein ligase HUL4 OS=Ashbya gossypii GN=HUL4 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.379e-13
Identity = 48/160 (30.00%), Postives = 74/160 (46.25%), Query Frame = 1
Query:    1 EAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHI-KFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            E+FR GF  V +  S ++F   EL+ L+CG  E     ++   + ++  G+   SP +    EI+ E    QQR    FVTG+ R+P  G+  +  +++ +R                  S  D LP   TC N + L  Y  KE +  KL+ A+ E QG
Sbjct:  694 ESFRNGFFHVIEGNSFRLFGSEELEQLVCGSNEQSLDVSMLRSVTRYQGGFDDNSPVVQWFWEILSEMEYPQQRKLLHFVTGSDRVPATGVTTIPFRISRIR------------------SGADRLPLSHTCFNEICLHEYKDKETLRNKLIIALEESQG 835          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: UPL7_ARATH (E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.225e-12
Identity = 53/163 (32.52%), Postives = 72/163 (44.17%), Query Frame = 1
Query:    4 AFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            AF  G   +     L++F  HE + LL G     +   L  + K+  GY+  S  I    E+M  F P ++    +FVT   R P  G   L P   I +    T+   A  G        + LPS  TC N LKLP Y     M +KL+YAI+   G F+LS
Sbjct:  986 AFYRGLTDLISPAWLKLFNAHEFNQLLSGGNHDIDVDDLRRNTKYTGGYSDSSRTIKIFWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQPTFIIHKVSCDTSLWAAIGGQDV-----ERLPSASTCYNTLKLPTYKRASTMREKLLYAITSNAG-FELS 1142          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.600e-12
Identity = 55/169 (32.54%), Postives = 77/169 (45.56%), Query Frame = 1
Query:    1 EAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDD------LPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            +AF  GFN+V  +  L+ F   EL+ +LCG +E+    W+  A+  H      YT  S  I    +++ E   +++    QFVTG  RLP GG A L                      GP +   D       LP   TC N L LPPY + E + +KL+YAI E +G
Sbjct:  722 KAFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKNAIYRH------YTKSSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGGFAEL------------------IGSNGPQKFCIDRVGKETWLPRSHTCFNRLDLPPYKSYEQLKEKLLYAIEETEG 866          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: WWP2_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens GN=WWP2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.600e-12
Identity = 54/169 (31.95%), Postives = 77/169 (45.56%), Query Frame = 1
Query:    1 EAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDD------LPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            +AF  GFN+V  +  L+ F   EL+ +LCG +E+    W+ + +  H      YT  S  I    +++ E   +++    QFVTG  RLP GG A L                      GP +   D       LP   TC N L LPPY + E + +KL+YAI E +G
Sbjct:  722 KAFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKSTIYRH------YTKNSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGGFAEL------------------IGSNGPQKFCIDKVGKETWLPRSHTCFNRLDLPPYKSYEQLREKLLYAIEETEG 866          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: HUL5_YEAST (Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces cerevisiae GN=HUL5 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.600e-12
Identity = 52/163 (31.90%), Postives = 79/163 (48.47%), Query Frame = 1
Query:    4 AFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            AF  G + +     +++F   EL  L+ G R+  +   L  + ++  GY  +   IV+  E++ EF  +++  F +FVT  P+ P  G   L+PK  I            + GT         LP+  TC N LKLP Y  K I+ +KL+YAI+ G   FDLS
Sbjct:  766 AFHGGLSVIIAPHWMEMFNSIELQMLISGERDNIDLDDLKSNTEYG-GYKEEDQTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAPLQGFKALDPKFGI-----------RNAGTEKYR-----LPTASTCVNLLKLPDYRNKTILREKLLYAINSG-ARFDLS 910          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: ITCH_MOUSE (E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.089e-12
Identity = 54/169 (31.95%), Postives = 77/169 (45.56%), Query Frame = 1
Query:    1 EAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSE------SADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            +AF  GFN++     LQ F   EL+ LLCG +E+    W+  A+  H      YT  S  I+   + + E   +++    QFVTG  RLP GG A L                      GP +        ++ LP   TC N L LPPY + E + +KL++AI E +G
Sbjct:  716 QAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAIYRH------YTRTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADL------------------MGSNGPQKFCIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEG 860          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: HECD2_PONAB (Probable E3 ubiquitin-protein ligase HECTD2 OS=Pongo abelii GN=HECTD2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.564e-12
Identity = 49/158 (31.01%), Postives = 78/158 (49.37%), Query Frame = 1
Query:    4 AFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            AF  GF+ V    +L +  P E++ L+CG  +L +  AL    ++D GY      I    +++  F  D Q+    F TG+ R+P GG+A LN K++                   +E++ + LP   TC N L LPPY +K+ + +KL+  IS  +G
Sbjct:  635 AFYYGFHSVCASNALMLLRPEEVEILVCGSPDL-DMHALQRSTQYD-GYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLNFKIS------------------KNETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGISNSEG 772          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: HECD2_HUMAN (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.564e-12
Identity = 49/158 (31.01%), Postives = 78/158 (49.37%), Query Frame = 1
Query:    4 AFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            AF  GF+ V    +L +  P E++ L+CG  +L +  AL    ++D GY      I    +++  F  D Q+    F TG+ R+P GG+A LN K++                   +E++ + LP   TC N L LPPY +K+ + +KL+  IS  +G
Sbjct:  635 AFYYGFHSVCASNALMLLRPEEVEILVCGSPDL-DMHALQRSTQYD-GYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLNFKIS------------------KNETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGISNSEG 772          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: WWP1_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus musculus GN=Wwp1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 7.940e-12
Identity = 54/169 (31.95%), Postives = 75/169 (44.38%), Query Frame = 1
Query:    1 EAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSE------SADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            +AF  GFN+V  +  LQ F   EL+ +LCG +E+    W+   +  H      YT  S  I+   + + E   + +    QFVTG  RLP GG A L                      GP +        D  LP   TC N L LPPY + E + +KL++AI E +G
Sbjct:  770 KAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH------YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAEL------------------MGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEG 914          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: WWP1_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Homo sapiens GN=WWP1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.940e-12
Identity = 54/169 (31.95%), Postives = 75/169 (44.38%), Query Frame = 1
Query:    1 EAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSE------SADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            +AF  GFN+V  +  LQ F   EL+ +LCG +E+    W+   +  H      YT  S  I+   + + E   + +    QFVTG  RLP GG A L                      GP +        D  LP   TC N L LPPY + E + +KL++AI E +G
Sbjct:  774 KAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH------YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAEL------------------MGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEG 918          
The following BLAST results are available for this feature:
BLAST of DY258863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
HUL4_ASHGO9.379e-1330.00Probable E3 ubiquitin-protein ligase HUL4 OS=Ashby... [more]
UPL7_ARATH1.225e-1232.52E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis th... [more]
WWP2_MOUSE1.600e-1232.54NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus... [more]
WWP2_HUMAN1.600e-1231.95NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Hom... [more]
HUL5_YEAST1.600e-1231.90Probable E3 ubiquitin-protein ligase HUL5 OS=Sacch... [more]
ITCH_MOUSE2.089e-1231.95E3 ubiquitin-protein ligase Itchy OS=Mus musculus ... [more]
HECD2_PONAB3.564e-1231.01Probable E3 ubiquitin-protein ligase HECTD2 OS=Pon... [more]
HECD2_HUMAN3.564e-1231.01Probable E3 ubiquitin-protein ligase HECTD2 OS=Hom... [more]
WWP1_MOUSE7.940e-1231.95NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus... [more]
WWP1_HUMAN7.940e-1231.95NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DC05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258863 ID=DY258863; Name=DY258863; organism=Citrus clementina; type=EST; length=1213bp
GAAGCTTTTAGAGCTGGCTTCAATCAGGTCTTTGACATCACATCATTACA
AATATTTACTCCTCATGAATTGGACCATCTGCTTTGTGGCCGTAGAGAGT
TGTGGGAGCCTGCGGCGCTTGCTGAGCATATAAAATTCGATCATGGATAC
ACTGCCAAGAGTCCTGCAATTGTTAACTTACTAGAGATCATGGGAGAATT
CACACCAGATCAGCAGCGTGCCTTCTGTCAGTTTGTTACTGGTGCACCTC
GTCTTCCACCGGGTGGGTTGGCGGTGCTGAATCCAAAGCTTACCATTGTC
AGAAAGCATTCTTCAACTGCACCTAATACAGCATCAAATGGAACCGGGCC
TTCGGAATCAGCGGATGATGACTTGCCAAGTGTCATGACTTGTGCCAATT
ACCTGAAGCTTCCTCCTTACTCTACCAAGGAAATTATGTACAAGAAACTG
GTTTATGCAATAAGCGAAGGGCAGGGATCTTTTGATCTGTCATGAGTTCT
CAAAACTAACCGATGGACCTTTGTATATTAATATATGTGTCATCAAGTCA
ATTCTCTTACCTGGGGATTATTCATCTTTGAAAGTAGCATCATATTTCAG
TCAAATAATGGCTGCTTTTCACTGCCCTTGTATCAATGTTCACATCATTG
GCAAGTTGATTTTTTTTGTTTCAGGTCAGACTTCANGCTGCCACAGTGCC
ACACTCTCTCAACAGAGATTTGAAGAGGGAAATTGTGGAGCAGTTTTTTG
GCTGCTGCTAGGACTTTGTATATAAATAGGAAACTTAGATTTTTTTGTCT
TTTTTTCCCTCCATTGACAAGTTATGGGCTGCCGAGTCGACATAACATGT
ATGGCATAAAAATGAAGGGAAAGGAAAAATAAATTTGTTGAAATGGTATT
GCTTAATTTTAACCTCATATTCTTTTCCAAAAAAAAAAAAAAAAAAAACC
CCACTTTTCCTTGACAAAAGTTTGGCATTATAAAAAAAGCCTTTGCTTTT
TCATATTTTTTTGCACCGAAAAAGGGTCCCTTATCCCGTCAAAAAAAAAA
ATTCCTTTTATTTTGCCCTCCCCACCCTAAAATTCCCCCCAAAAAAGGAG
ATTCCTAATTTAATTGGGGTCCTAAACCTGGTTTTCCCCCCGGGCCCCCC
CCCTCGCGCCCCCGGGCTTTCCCAAAAAAAATCTTTTGTTAAATTGTTAT
TCTTTTGGTTCCC
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