DY258866

Overview
NameDY258866
Unique NameDY258866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14378 contig Ccv1_Contig14378:43..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258866 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.078e-28
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 2
Query:   62 LKLVS--ALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIP--NLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            LKLV   A++ CM V GP +  A++CGQV  +L PCI Y+ +GG +   CC GVRSL + A+TT DRQ+ CNCLKQA   IP  N N   A GLP  CGV+IPYKIS STDC  ++
Sbjct:    8 LKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of DY258866 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.078e-28
Identity = 62/114 (54.39%), Postives = 76/114 (66.67%), Query Frame = 2
Query:   56 AALKLVSALVLCMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 394
            A L LV+ +   +L+ GP +  A I+CGQV  +++PC+ Y R G      CC+GVRSLN+AA TT DR+TACNCLK  AGSI  LN  NA  +P  CGVSIPY IS S DCS V
Sbjct:    4 AQLVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of DY258866 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.078e-28
Identity = 66/119 (55.46%), Postives = 85/119 (71.43%), Query Frame = 2
Query:   53 MAALKLVSALV--LCMLV-TGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            MA+L+ VS LV  +CM+V + P++  AI+CG V+G+L PC+ YL+ GGP P P CC GV+ LN AARTT DR+ ACNCLK +AGSI  L P N   LP  CGV +PY IS ST+C+ +R
Sbjct:    1 MASLR-VSCLVALMCMVVISAPMAEAAISCGTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of DY258866 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.078e-28
Identity = 65/116 (56.03%), Postives = 78/116 (67.24%), Query Frame = 2
Query:   53 MAALKLVS-ALVLCMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 394
            MA  +LV  ALV  +L+ GP +  A I+CGQV  +++PC+ Y R G      CC+GVRSLN+AA TT DR+TACNCLK  AGSI  LN  NA  +P  CGVSIPY IS S DCS V
Sbjct:    1 MARAQLVLVALVAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of DY258866 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.078e-28
Identity = 62/114 (54.39%), Postives = 76/114 (66.67%), Query Frame = 2
Query:   56 AALKLVSALVLCMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 394
            A L LV+ +   +L+ GP +  A I+CGQV  +++PC+ Y R G      CC+GVRSLN+AA TT DR+TACNCLK  AGSI  LN  NA  +P  CGVSIPY IS S DCS V
Sbjct:    4 AQLVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of DY258866 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.544e-28
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = 2
Query:   62 LKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 394
            + ++   V CM+ +    A AI+CGQVT  L PC  YL +GGP+P  CCNGVR LN AA+TTPDRQTAC CLK    +   +N NNA  LP  CG+SI YKI+ + DCSK+
Sbjct:    6 MNVLCVAVACMVFSASY-ADAISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of DY258866 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.629e-28
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 2
Query:   62 LKLVSALVLCMLVTGPLSAQAI-TCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSI-PNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            +KL   ++ CM+V GP++A A+ +CG V G+LA CI YL  G P+   CCNGV +L   A TTPDRQ AC CL+ AA ++ P LN   A GLP AC V+IPYKIS ST+C+ VR
Sbjct:    5 MKLACMVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of DY258866 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.045e-28
Identity = 61/110 (55.45%), Postives = 74/110 (67.27%), Query Frame = 2
Query:   68 LVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIP-VPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 394
            + +A+V  +L+    S  AI+CGQV  ++APCI Y R  G  P   CC+GVRSLN AARTT DR+ ACNCLK AA  +  LN  NA  +P  CGVSIPY IS STDCS+V
Sbjct:   10 VATAVVALVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of DY258866 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.759e-27
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 2
Query:   65 KLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            K+   +VLCM+V  P  A+A++CGQV   LAPC+ YL+  GP+   CC GV+ L  AA++  DR+TAC CLK AA +I  ++   A GLP ACGV+IPYKIS STDCSKV+
Sbjct:    6 KIACFVVLCMVVVAP-HAEALSCGQVQSGLAPCLPYLQGRGPLG-SCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of DY258866 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.759e-27
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 2
Query:   65 KLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 397
            K+   ++LCM+V  P  A+A+TCGQVT  LAPC+ YL+  GP+   CC GV++L  +A+TT DR+TAC CLK AA +I  ++ N A G+P  C V+IPYKIS STDCS V+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
The following BLAST results are available for this feature:
BLAST of DY258866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP3_PRUDU2.078e-2854.31Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP2_ORYSI2.078e-2854.39Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTP1_LENCU2.078e-2855.46Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLT2B_ORYSJ2.078e-2856.03Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ2.078e-2854.39Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP_GERHY3.544e-2853.15Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP2_ARATH4.629e-2853.51Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP_MAIZE6.045e-2855.45Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP2_TOBAC1.759e-2754.05Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP1_SOLLC1.759e-2753.15Non-specific lipid-transfer protein 1 OS=Solanum l... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DC08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258866 ID=DY258866; Name=DY258866; organism=Citrus clementina; type=EST; length=622bp
AAGGCAAAAAAAAAAAAGAAAAAGAAAAAGAAAATCTCAGGAGAAATCTC
AAATGGCTGCCCTCAAGCTTGTTTCAGCTTTGGTTCTGTGCATGTTGGTG
ACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAGGTGACTGGCTC
ATTGGCACCATGCATCGTTTACTTGAGATCGGGCGGCCCTATACCTGTGC
CATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAACCACACCT
GACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGATCAATCCC
TAACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTGTGGAGTCA
GCATTCCTTACAAGATCAGCATCTCTACTGACTGCTCTAAGGTCCGGTGA
ACAGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGACGGAGTAGAATA
AATGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGTCTCTCTCT
ACACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGTTGTGTCTT
ATTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTCTGTTTATT
AAATGAAATCTTGCCTTGTGTT
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