DY258868

Overview
NameDY258868
Unique NameDY258868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1140
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_LACRD (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus reuteri (strain DSM 20016) GN=dapL PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.328e-26
Identity = 73/224 (32.59%), Postives = 113/224 (50.45%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTG-------IVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEE---GGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L+ +RR +H+ PEL  +E +T   +   +   G   A+   +T        +V   G   +  +  R D+DALP++E     + S   G MHACGHD+H T+ LG       HQ +D     +   FQPAEE   GG  A+ +         +  +G+H +  +P G+I    G   A T+  N+ + G+GGHAA P +  D ++ A+S+IL +Q +ISR  DP
Sbjct:    7 LIQIRRHLHQIPELALQEFDTHQYLVETI--AGFNQAFLEVRTFKELPTALMVLVHGKNPQRTIGYRTDIDALPVEEQTGLPYSSTHPGVMHACGHDIHMTVALGVLNYFSEHQPQDN----ILFFFQPAEESENGGKRAYELGLFSGKWKPDEFYGLHDNPDLPAGAIGCRMGTLFAGTTEVNIDLNGKGGHAAYPQNANDTVVAAASLILQVQTVISRSIDP 224          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_LISW6 (Putative N-acetyldiaminopimelate deacetylase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dapL PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 6.774e-26
Identity = 77/218 (35.32%), Postives = 116/218 (53.21%), Query Frame = 1
Query:  139 VSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAK---TGIVAQIGSGSRP--VVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIK--EGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            +++RR +H+ PE  ++E  T A +   + KL  P  +   K   TGI+  +  G++P   +  R D+DALP+ E      +S   G MHACGHD+H ++ LG   L H      +  +  +FQPAEEG  GA  +++  E A    + I+G+HI      G IA   G   A TS   +  +G+GGHAA PH   D ++ AS+ +  +Q +ISR  DP
Sbjct:    6 IAIRRDLHQIPETGYKELKTQAYLLAYISKL--PNKHLEVKKWRTGILVLV-KGTKPEKTIGYRTDIDALPITEETGLPFESNHVGNMHACGHDLHMSIALGV--LTHFASKPAKDNLLFVFQPAEEGPGGAKPIMESEEFAAWRPDTIYGLHIAPEYKVGEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDP 218          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: Y1352_STAS1 (Uncharacterized hydrolase SSP1352 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1352 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.971e-25
Identity = 68/189 (35.98%), Postives = 101/189 (53.44%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDK--LEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA 684
            +++   RR +H++PEL   E+ T+  I   LD LG+PY  P+  TG++A +   S   +A RAD+DALP+ E     ++S++D  MHACGHD HTT L+   K      DK  L   +  +FQPAEE G GA  +I+ GA      EA+FG+H+      G +        A+ + +   + G   H A
Sbjct:    5 EFVTEHRRYLHKHPELSLHEYETTKYIAHFLDDLGVPYERPL-DTGVIAYLSGNSTHTIAYRADIDALPIYEENNVSYRSEVDHVMHACGHDGHTTALMLFVKRCKNLADKGELPQNIVFIFQPAEETGGGANRLIRAGAFEKYPIEAVFGIHVMPFENEGRVVIRDEEITASATEYRFYLHGLSSHVA 192          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_LACF3 (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=dapL PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 5.735e-25
Identity = 79/226 (34.96%), Postives = 115/226 (50.88%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALI-----RRELDKLGI--PYAYPVAKTGIVAQIGSGSRPV--VALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGDS---EAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L+ +R  +H+ PEL  +E  T A +     + E D L I  P   P   T I+ ++ +G+ PV  +  R D+DALP+QE     + S   G MHACGHDVH T+ LG       HQ KD L       FQPAEE  AG     + G        +  +G+H +  + TG I    G   A T+  ++ V G+ GHAA P    D ++ A+++I+ +Q +ISR  +P
Sbjct:    7 LIQIRHHLHQIPELALQETETHAYLMEVIGKMEQDHLEILEPEDLP---TAILVRV-NGTAPVRTIGYRTDIDALPVQEETGLPYASTHSGVMHACGHDVHMTVALGVLDYFASHQPKDNL----LFFFQPAEESEAGGQRAYELGLFEGKWRPDEFYGLHDNPALKTGVIGCRLGTLFAGTTEVDIDVLGKDGHAAFPQEANDAVVAAAALIMQVQTIISRSINP 224          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_LACPL (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus plantarum GN=dapL PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 9.782e-25
Identity = 66/220 (30.00%), Postives = 110/220 (50.00%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPY----AYPVAKTGIVAQIGSGSRPV-VALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGAL-GD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L+ + + +H+ PE+  +EH T A +   + K+   +      P   T I+ ++        +  R D+DALP+ E       S   G MHACGHD+H ++ LG      + +   +  +  +FQPAEE  +G   + + GAL GD   + IF  H +  +PTG+I    G   A T   +  + G+ GHAA PH   D ++  ++++  LQ +++R  DP
Sbjct:    8 LIPIYQHLHQIPEIGLQEHETQAYLLSIIGKMPQEWLTIKTIPTLDTAILVKVSGLKHDYRIGYRTDIDALPVTENTGLPFASTHPGVMHACGHDIHMSVALGILSYFAENRPATD--MVFMFQPAEENASGGQRLYESGALDGDWMPDEIFAFHDNPNLPTGAIGCRMGTLFAGTCEIHAHLSGKSGHAAYPHQANDMVVAGAALVSQLQTIVARNVDP 225          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: Y1398_STAAM (Uncharacterized hydrolase SAV1398 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV1398 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 6.340e-24
Identity = 75/214 (35.05%), Postives = 114/214 (53.27%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKD--KLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSV-FNVKVEGRGGHAA---MPHSTIDPILTASSVILALQQ 747
            +++   RR +H++PEL   E  T+A I+  LD L I Y  P+ +TG++A +       +A RAD+DALP+ E  +  ++S+ D  MHACGHD HTT L+   +     +D  +L   V  +FQPAEE G GA  +IK GA      EA+FG+H++     G IA I    + A++  +   + G   H A     HS  + +    + I  +QQ
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEG-IAVIRDEEITASATEYRFFLTGLSSHVADKEQAHSCGEALQHVLTQISQIQQ 216          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: Y1230_STAAN (Uncharacterized hydrolase SA1230 OS=Staphylococcus aureus (strain N315) GN=SA1230 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 6.340e-24
Identity = 75/214 (35.05%), Postives = 114/214 (53.27%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKD--KLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSV-FNVKVEGRGGHAA---MPHSTIDPILTASSVILALQQ 747
            +++   RR +H++PEL   E  T+A I+  LD L I Y  P+ +TG++A +       +A RAD+DALP+ E  +  ++S+ D  MHACGHD HTT L+   +     +D  +L   V  +FQPAEE G GA  +IK GA      EA+FG+H++     G IA I    + A++  +   + G   H A     HS  + +    + I  +QQ
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEG-IAVIRDEEITASATEYRFFLTGLSSHVADKEQAHSCGEALQHVLTQISQIQQ 216          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: Y1433_STAAC (Uncharacterized hydrolase SACOL1433 OS=Staphylococcus aureus (strain COL) GN=SACOL1433 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.281e-24
Identity = 70/190 (36.84%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKD--KLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSV-FNVKVEGRGGHAA 684
            +++   RR +H++PEL   E  T+A I+  LD L I Y  P+ +TG++A +       +A RAD+DALP+ E  +  ++S+ D  MHACGHD HTT L+   +     +D  +L   V  +FQPAEE G GA  +IK GA      EA+FG+H++     G IA I    + A++  +   + G   H A
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEG-IAVIRDEEITASATEYRFFLTGLSSHVA 192          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: Y1410_STAAR (Uncharacterized hydrolase SAR1410 OS=Staphylococcus aureus (strain MRSA252) GN=SAR1410 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.281e-24
Identity = 70/190 (36.84%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKD--KLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSV-FNVKVEGRGGHAA 684
            +++   RR +H++PEL   E  T+A I+  LD L I Y  P+ +TG++A +       +A RAD+DALP+ E  +  ++S+ D  MHACGHD HTT L+   +     +D  +L   V  +FQPAEE G GA  +IK GA      EA+FG+H++     G IA I    + A++  +   + G   H A
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTTLMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEG-IAVIRDEEITASATEYRFFLTGLSSHVA 192          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: Y1399_STAA8 (Uncharacterized hydrolase SAOUHSC_01399 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_01399 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.281e-24
Identity = 70/190 (36.84%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKD--KLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSV-FNVKVEGRGGHAA 684
            +++   RR +H++PEL   E  T+A I+  LD L I Y  P+ +TG++A +       +A RAD+DALP+ E  +  ++S+ D  MHACGHD HTT L+   +     +D  +L   V  +FQPAEE G GA  +IK GA      EA+FG+H++     G IA I    + A++  +   + G   H A
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEG-IAVIRDEEITASATEYRFFLTGLSSHVA 192          
The following BLAST results are available for this feature:
BLAST of DY258868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DAPL_LACRD2.328e-2632.59Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LISW66.774e-2635.32Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
Y1352_STAS11.971e-2535.98Uncharacterized hydrolase SSP1352 OS=Staphylococcu... [more]
DAPL_LACF35.735e-2534.96Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LACPL9.782e-2530.00Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
Y1398_STAAM6.340e-2435.05Uncharacterized hydrolase SAV1398 OS=Staphylococcu... [more]
Y1230_STAAN6.340e-2435.05Uncharacterized hydrolase SA1230 OS=Staphylococcus... [more]
Y1433_STAAC8.281e-2436.84Uncharacterized hydrolase SACOL1433 OS=Staphylococ... [more]
Y1410_STAAR8.281e-2436.84Uncharacterized hydrolase SAR1410 OS=Staphylococcu... [more]
Y1399_STAA88.281e-2436.84Uncharacterized hydrolase SAOUHSC_01399 OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DC12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258868 ID=DY258868; Name=DY258868; organism=Citrus clementina; type=EST; length=1140bp
CAACGGATTGTTATTGAGATGGCGATTGCCTTTTTGCTTCTTCTACTACC
GATCACTTATCTCACTACGACCACAGCAGTTGATGAAATACTTACAAATC
AAGTTATGATATCAGCTCAACAAGATAAAGATTGGCTAGTCTCTGTAAGA
AGACAAATCCATGAAAACCCGGAACTGCTATTCGAAGAACACAACACAAG
TGCCCTCATTCGCAGAGAACTTGATAAACTTGGAATCCCTTATGCATACC
CAGTCGCCAAAACAGGCATTGTAGCACAGATTGGCTCTGGTTCTCGCCCT
GTCGTCGCGTTGAGAGCTGACATGGATGCTCTCCCTTTGCAAGAGCTCGT
GGAATGGGAGCATAAGAGCAAAATTGATGGCAAAATGCACGCATGTGGAC
ATGACGTCCACACCACCATGCTTCTTGGTGCTGCCAAGTTGCTTCATCAA
CGTAAAGATAAACTTGAGGGAACTGTGAGAATTCTTTTCCAACCTGCTGA
GGAGGGAGGTGCAGGTGCCTTTCACATGATAAAAGAAGGCGCTCTTGGTG
ACTCTGAAGCAATATTTGGAATGCATATTGACGTAGGAATACCTACAGGA
AGTATAGCATCAATTTCTGGGCCACACTTGGCTGCTACATCCGTTTTTAA
TGTTAAAGTAGAGGGAAGAGGCGGACATGCTGCAATGCCCCATTCAACAA
TCGATCCTATACTTACTGCTTCATCTGTGATATTGGCATTGCAGCAACTT
ATTTCAAGAGAAGCAGATCCCCTCCAAAGTCTAGTATGTCTCAGTCTCCT
TTTATCAATTTATTCTGAAACCTGTGAACTTTTGCCATTGAAAGCATGAA
GAATTCTCCATTTCACTCTTAATAATTTTTACTGGAATTTTTACTGCTTG
AATGATTGCAAAGAAAAACTTGAAGTGAATATATCATTGGGTGAACTAAA
TACTAGTTTGGCTTTGGGCTGAAAGGGGGTTTCCTGTTACTTAAGTTTAA
AAGGGGGGAACTGGATTTTTAATAAAAATTCCCCCCTTTTGTTGGAATTT
TGGAAGGCCCTTTTGAGGAGATTCTTACAAACTTGGAGGGGCTTTTTATC
CCACCTCCCAAAAAAAAGGGGTGGGAAGGGAAGGGGTTGT
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