DY258872

Overview
NameDY258872
Unique NameDY258872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1002
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258872 vs. ExPASy Swiss-Prot
Match: SAP14_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 14 OS=Oryza sativa subsp. japonica GN=SAP14 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.498e-18
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  430 SMEPSSGSSFGFAGVKAKEGPK--RCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKL 669
            S   ++ +S+  +     E P+  RC TC ++VGLTGF CRCG  FC  HRY+D+HGC FDY+++ RE IAK NPVV A+KL
Sbjct:  152 SAAAAADASYSSSSPATGEQPEANRCATCRRKVGLTGFKCRCGGTFCGGHRYADEHGCGFDYKSSGRELIAKQNPVVVADKL 233          
BLAST of DY258872 vs. ExPASy Swiss-Prot
Match: ZFAN6_BOVIN (AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.338e-18
Identity = 46/95 (48.42%), Postives = 56/95 (58.95%), Query Frame = 1
Query:  394 DLQVGPVEIKKFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKLDKI 678
            DLQ    E  + + E  S S       K K+   RC  C K+VGLTGF CRCGN++C VHRYSD H C ++Y+  A E I K NPVV  EK+ KI
Sbjct:  119 DLQASVSETAQQASEEQSKSL-----EKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208          
BLAST of DY258872 vs. ExPASy Swiss-Prot
Match: SAP10_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Arabidopsis thaliana GN=SAP10 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.826e-17
Identity = 45/153 (29.41%), Postives = 71/153 (46.41%), Query Frame = 1
Query:  217 CVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAAXXXXXXXXXXXXXXXKEPIIAGSVDLQVGPVEIKKFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKLDK 675
            C   CG +G+    N+CS C+K  +L    A                             L+  P   +     P++  +     VK +    RC  C ++VG+ GF CRCG++FC  HRY ++H CPFDY+ + R A+A   P+++A+KL +
Sbjct:   10 CEGGCGLYGTRVNNNLCSLCYKKSVLQHSPA-----------------------------LRFEPETEQSQCCPPTNSPAVEEEPVKKR----RCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSGRLALATQLPLIRADKLQR 129          
BLAST of DY258872 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 6.514e-14
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  481 KEGPKRCTTCNKRVGL-TGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKLDKI 678
            K+    C  C K+ GL + + CRCGN FCA HRY++ HGC +DY++A R  + +ANPVV A KL KI
Sbjct:  661 KKTTNHCFLCGKKTGLASSYECRCGNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVVNAPKLPKI 727          
The following BLAST results are available for this feature:
BLAST of DY258872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SAP14_ORYSJ1.498e-1851.22Zinc finger AN1 domain-containing stress-associate... [more]
ZFAN6_BOVIN3.338e-1848.42AN1-type zinc finger protein 6 OS=Bos taurus GN=ZF... [more]
SAP10_ARATH2.826e-1729.41Zinc finger A20 and AN1 domain-containing stress-a... [more]
ANUB1_HUMAN6.514e-1450.75AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DD04FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258872 ID=DY258872; Name=DY258872; organism=Citrus clementina; type=EST; length=1002bp
GATTGAAGGCAAGCTTTCACGTCCATAAAACGACGTCGATTAGTTTCAGT
CTTGTCGGTTGATCAAAACCTTGATTTTTGAAACTGATTTTTGGGGAATT
TTTTTTTACAGATTAATTCGGTTCGATTTTGTAAATCAAGATCGGACGAA
TAGGAGGTAGAAAAGATGGAATCACATGATGAAACTGGATGCCAAGCTCC
AGAAGGCCCCATTCTTTGCGTCAACAATTGTGGCTTCTTCGGAAGTGCTG
CTACCATGAATATGTGTTCCAAGTGCCACAAGGCCATGATCCTTAATCAG
GAACAGGCCCAACTAGCAGCTTCATCTATTGGGAGCATTGTGCATGGCAG
CTCCGGTGGGACTGGCAAGGAGCCCATCATTGCTGGCAGCGTGGATCTAC
AAGTGGGACCAGTTGAGATAAAGAAATTCTCCATGGAACCATCTAGTGGT
TCTTCCTTTGGCTTCGCAGGAGTGAAAGCAAAGGAAGGCCCTAAAAGGTG
TACAACTTGCAATAAACGTGTCGGTTTGACAGGGTTCAATTGCAGATGTG
GGAACCTCTTCTGTGCAGTTCACCGATACTCTGACAAGCATGGCTGTCCG
TTTGATTATAGGACTGCTGCTCGGGAAGCAATTGCTAAAGCCAACCCTGT
CGTGAAGGCGGAGAAACTTGACAAAATCTAGAAGTGATGAACTGAAGGTT
TATGCAAAGAATATGATGCTTTTCTTTTTANGCACGCATGATATAAGTTG
GTTTCTTGTCTGGTTAGATGTCCTTTATTGGTATAAATGGTTTCAGGTCA
TGATTTTCAGGACATCATTGCAGTTATATTCCTTGCTGATTGGCAAGGAT
TCCCTTGTTGGCTCCATTGGGTAAGTCTCTATTTGTGCCTGGGTTTTGAA
GGACCACTTTTGTGGGTAATTTGAAATATGGCTTCTGGTGGGGAAGGCTT
TTCTTTGGAAGAATAAAAGGAAGGAAAAAAAAAATCGGTAATTTGCCGTG
GG
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