DY258873

Overview
NameDY258873
Unique NameDY258873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: DHSO_RHOSH (Sorbitol dehydrogenase OS=Rhodobacter sphaeroides GN=polS PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.077e-12
Identity = 54/200 (27.00%), Postives = 93/200 (46.50%), Query Frame = 1
Query:   49 DVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIP-ARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMN----------SAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            DVT+++ I   + + +   G +DI+ NNA +   +   I++  +  ++R+ ++NV+G    ++  AR MI   R G I+                YC  K AV+ LT++A + L + GI VN ++P  +       + G+ D     + N           AA   G   R ED+   A++LA+ EA Y+      +DGG
Sbjct:   59 DVTDQASIDRCVAELLDRWGSIDILVNNAAL--FDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVD---GEHWDGV-DAKFADYENLPRGEKKRQVGAAVPFGRMGRAEDLTGMAIFLATPEADYIVAQTYNVDGG 252          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: FABG_MYCAV (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium avium GN=fabG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.713e-12
Identity = 50/192 (26.04%), Postives = 89/192 (46.35%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            V CDVT+   +  A  +     G ++++ +NAGI  +    +I   +  F  V++ N+TG F   + AAR M   R G I+                Y  AK  ++G+ ++ + EL + G+  N ++P  + T +  +     DE ++         K V    E +  A  +LAS++A Y++G  + +DGG
Sbjct:   66 VECDVTDNDAVDRAFTEVEEHQGPVEVLVSNAGI--SKDAFLIRMTEERFTEVINANLTGAFRVTQRAARSMQKKRFGRIIYIGSVSGMWGIGNQANYAAAKAGLIGMARSISRELSKAGVTANVVAPGYIDTEMTRAL----DERIQAGALEFIPAKRVGTAAE-VPGAVSFLASEDASYIAGAVIPVDGG 250          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: FABG_VIBHA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Vibrio harveyi GN=fabG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.543e-12
Identity = 59/210 (28.10%), Postives = 98/210 (46.67%), Query Frame = 1
Query:    1 SVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKT-RIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTIV 627
            ++ E +G  N   +  +VT+   I+  +       G +DI+ NNAGI   N   R+ D+E  D   +++ N+T ++   K   R M+  R+G I+                Y  AK  V+G TK+ A E+   G+ VN ++P  + T +  +     D+      N  A   G      +IA A ++LAS EA Y++G  L ++GG  +V
Sbjct:   44 AISEYLG-ENGKGLALNVTDVESIEATLKTINDECGAIDILVNNAGITRDNLLMRMKDDEWND---IINTNLTPIYRMSKAVLRGMMKKRAGRIINVGSVVGTMGNAGQTNYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALND--DQRAATLSNVPAGRLG---DPREIASAVVFLASPEAAYITGETLHVNGGMYMV 244          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: CBR4_XENLA (Carbonyl reductase family member 4 OS=Xenopus laevis GN=cbr4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.543e-12
Identity = 52/193 (26.94%), Postives = 90/193 (46.63%), Query Frame = 1
Query:   46 CDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTI 624
            CDV+ E+ I+    +     G +D + N+AGI  +    ++     D   +LS+N+ G     K A + MI  + GSI+                Y  +K  ++G +K+ A E+ +  IRVN ++P  + T +       T +  E  +N    L G     E++A + L+L   E+ Y++GH L +DGG  +
Sbjct:   54 CDVSKENEIQCTFKEIKNNLGNIDYLVNSAGI--SRDALLLRTRSEDIMSLLSINLVGTIQTCKVALKGMIQQQGGSIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIRTDM-------TSDLKEDSLNKMIPL-GRFGEPEEVAQSVLFLL--ESPYITGHVLVVDGGLQL 234          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.628e-12
Identity = 53/192 (27.60%), Postives = 90/192 (46.88%), Query Frame = 1
Query:   46 CDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDED--LEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            C V      +  +   V  HG +DI+ +NA +     + ++D  +  ++++L VNV    L  K     M     GSI+                Y  +K A+LGLTKN A+EL +  +RVNCL+P      + TSF  +  ED   +  + +   +K +  + E+ A    +L S++A Y++G  + + GG
Sbjct:   70 CHVGKAEDRERLVATAVKLHGGVDILISNAAVSPFFGS-LMDVPEEVWDKILDVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLALELAESNVRVNCLAPGL----IRTSFSRVLWEDPARQESIKATFQIKRIG-KPEECAGIVSFLCSEDASYITGETVVVAGG 255          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: NODG_RHIME (Nodulation protein G OS=Rhizobium meliloti GN=nodG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.044e-12
Identity = 52/193 (26.94%), Postives = 89/193 (46.11%), Query Frame = 1
Query:   49 DVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTIV 627
            ++ N   +K    +  A    +DI+ NNAGI        +     D++ VL VN+T +F   +   + MI  R+G I+                YC +K  ++G +K+ A E+    I VNC++P  + + +      +  +  E  M  A  +  +   TE +A A  YLASD A YV+G  + ++GG  ++
Sbjct:   60 NLANRDEVKALGQRAEADLEGVDILVNNAGI--TKDGLFLHMADPDWDIVLEVNLTAMFRLTREITQQMIRRRNGRIINVTSVAGAIGNPGQTNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDK---LNHKQKEKIM-VAIPIHRMGTGTE-VASAVAYLASDHAAYVTGQTIHVNGGMAMI 245          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: FABG_AQUAE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Aquifex aeolicus GN=fabG PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.044e-12
Identity = 52/192 (27.08%), Postives = 87/192 (45.31%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            V  ++ +E  I  A ++       +DI+ NNAGI        +     D+E VL VN+TG FL  +++ R MI  R G I+                Y   K  ++G TK+ A EL    + VN ++P  + T +      +  E+++        L G     E++A   L+L S+ A Y++G  + ++GG
Sbjct:   62 VEMNLLSEESINKAFEEIYNLVDGIDILVNNAGI--TRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDM----TAVLSEEIKQKYKEQIPL-GRFGSPEEVANVVLFLCSELASYITGEVIHVNGG 246          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: SPS19_YEAST (Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Saccharomyces cerevisiae GN=SPS19 PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12
Identity = 60/208 (28.85%), Postives = 90/208 (43.27%), Query Frame = 1
Query:   49 DVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLR----TEDIAYAALYLASDEAKYVSGHNLFIDGGFTIVNPSLGMFQYPD 660
            DV N   ++NA+ +TV   GK+D +   AG  G       +     F+ V+ +++ G F   K   + +  ++ GSIL                   AK  +  L KN AVELG  GIR NC++P A+             + L G       L  + L+    T DIA + +Y+ S  A YV+G  L +DGG   +    G   YP+
Sbjct:   85 DVRNFEQVENAVKKTVEKFGKIDFVI--AGAAGNFVCDFANLSPNAFKSVVDIDLLGSFNTAKACLKELKKSK-GSILFVSATFHYYGVPFQGHVGAAKAGIDALAKNLAVELGPLGIRSNCIAPGAIDNTEGL-------KRLAGKKYKEKALAKIPLQRLGSTRDIAESTVYIFSPAASYVTGTVLVVDGGMWHLGTYFGHELYPE 282          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: SDR1_PICAB (Short-chain type dehydrogenase/reductase OS=Picea abies PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12
Identity = 51/189 (26.98%), Postives = 85/189 (44.97%), Query Frame = 1
Query:   49 DVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            DV   S +    D      G L I+ NNAG+  +    +      +++R+  VN  G FL  + AA+ ++    G I+                Y  +K AV  +T+  A EL    I  NC++P  +AT +   F G ++  +E  + S  N      + ED+A    +LASDE ++V+   + ++GG
Sbjct:   85 DVAEPSQVAQLFDTAEHAFGPLHIVVNNAGVTDSKYPTLAQTSDEEWDRIFQVNCKGAFLCSREAAKRVVRGGGGRIINISSSLVAMPIPRYGAYTASKAAVEMMTRILAQELRGTQITANCVAPGPVATDM--FFAGKSEAAVEAGVKS--NPFERLGKVEDVAPLVAFLASDEGEWVNAQVVRVNGG 269          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g24360 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12
Identity = 53/193 (27.46%), Postives = 91/193 (47.15%), Query Frame = 1
Query:   49 DVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLA-SDEAKYVSGHNLFIDGGFTI 624
            DV+  + +   +   +   G +D++ NNAGI     T +I  +++ ++ V+++N+TGVFL  + A ++M+  + G I+                Y  AK  V+  +K AA E     I VN + P  +A+ +         ED+E  +     L G   + E++A    +LA S  A Y++G    IDGG  I
Sbjct:  134 DVSKATDVDAMMKTALDKWGTIDVVVNNAGI--TRDTLLIRMKQSQWDEVIALNLTGVFLCTQAAVKIMMKKKRGRIINISSVVGLIGNIGQANYAAAKGGVISFSKTAAREGASRNINVNVVCPGFIASDMTAEL----GEDMEKKILGTIPL-GRYGKAEEVAGLVEFLALSPAASYITGQAFTIDGGIAI 319          
The following BLAST results are available for this feature:
BLAST of DY258873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
DHSO_RHOSH2.077e-1227.00Sorbitol dehydrogenase OS=Rhodobacter sphaeroides ... [more]
FABG_MYCAV2.713e-1226.043-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
FABG_VIBHA3.543e-1228.103-oxoacyl-[acyl-carrier-protein] reductase OS=Vibr... [more]
CBR4_XENLA3.543e-1226.94Carbonyl reductase family member 4 OS=Xenopus laev... [more]
DHRS4_BOVIN4.628e-1227.60Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]
NODG_RHIME6.044e-1226.94Nodulation protein G OS=Rhizobium meliloti GN=nodG... [more]
FABG_AQUAE6.044e-1227.083-oxoacyl-[acyl-carrier-protein] reductase OS=Aqui... [more]
SPS19_YEAST7.894e-1228.85Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Sac... [more]
SDR1_PICAB7.894e-1226.98Short-chain type dehydrogenase/reductase OS=Picea ... [more]
FABG_ARATH7.894e-1227.463-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DD06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258873 ID=DY258873; Name=DY258873; organism=Citrus clementina; type=EST; length=841bp
TCAGTTGTTGAATCCATAGGCACATCAAACTCATCCTATGTCCATTGCGA
TGTCACAAACGAATCCCACATTAAAAATGCAATCGACCAAACCGTTGCAA
CTCATGGCAAGCTGGACATAATGTTCAACAACGCCGGCATAGGCGGCGCT
AACAAGACCCGCATAATCGACAATGAAAAGGCCGATTTCGAGCGTGTCCT
GAGTGTAAATGTCACCGGAGTTTTCTTGGGCATCAAGCATGCTGCTCGTG
TCATGATTCCGGCTCGCAGTGGCAGCATTCTTTCAACTGCTAGCGTTAGC
TCAAGGGTTGGTGCTGCTGCCTCACATGCATACTGTTGTGCAAAACATGC
TGTTTTAGGACTCACCAAAAATGCTGCTGTTGAGCTAGGCCAATTTGGGA
TTAGGGTGAATTGCTTGTCACCTTATGCTCTTGCAACACCTTTGGCTACC
AGTTTTGTTGGGATTACCGATGAGGATCTGGAAGGTTTTATGAATTCAGC
GGCTAACCTTAAGGGTGTGACTTTAAGGACCGAAGATATTGCATATGCAG
CTCTTTATCTAGCGAGTGATGAGGCGAAGTATGTGAGTGGACACAATCTT
TTCATTGACGGAGGTTTCACTATTGTCAATCCCTCCCTCGGAATGTTTCA
GTACCCAGATTCTTGATCGAGTTAGTTAATTTCATCAAGGTTTTTTCCCA
TTTGAGTGGGGAAAAAAAAAACTCTGTTCAAATAATTTCATATTTGATCC
TTGATATCGAATGAAACAAAATTGAACAAGTTTTTTTTCATTCCTAGACT
CCTTAAAAAAGAAATTATTTCCAAAACGAAACCTTGAGTTT
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