DY258873

Overview
NameDY258873
Unique NameDY258873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: Y3106_PSEAE (Uncharacterized oxidoreductase PA3106 OS=Pseudomonas aeruginosa GN=PA3106 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.346e-11
Identity = 57/206 (27.67%), Postives = 92/206 (44.66%), Query Frame = 1
Query:    4 VVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFT 621
            V E++G  ++ +V  DV  E  +  ++ + +   G+LD +  NA I     T +      ++ R L+VN+TG  L  K+     + A +G+I+                Y  +K  +L LT   A  LG   IRVN LSP  + T  A         +L+       +L G     ED+A    +L S++A +V+G    +DGG T
Sbjct:   50 VAEALG-EHAWFVAMDVAQEGQVAMSVAEVLGQFGRLDGLVCNAAIANPRNTPLEALSLGEWTRTLAVNLTGPMLLAKYCT-PYLRAHNGAIVNIASTRAHQSEPDSEAYAASKGGLLALTHALAASLGP-DIRVNALSPGWIDTREAAEREAAPLTELD----HDQHLVGRVGTVEDVASLVAWLLSEDAGFVTGQEFLVDGGMT 248          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: SORD_KLEPN (Sorbitol-6-phosphate 2-dehydrogenase OS=Klebsiella pneumoniae GN=sorD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.346e-11
Identity = 60/218 (27.52%), Postives = 101/218 (46.33%), Query Frame = 1
Query:   28 NSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKAD----------FERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSP-----YALATPLATSFV----GITDEDL-EGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFT 621
            N  +   D+++ + ++  ID  +    ++D + NNAG+   N  R++ +EKA           FE+++++N  GVF   +  AR M+  R+G I+                Y   K A+   T++ + ELG++GIRV  ++P       L TP     +     IT E L EG+  +A  + G   +  ++A    YL S  A Y++G    I GG T
Sbjct:   52 NYHFWSTDISSATEVQQTIDAIIQRWSRIDGLVNNAGV---NFPRLLVDEKAPAGRYELNEAAFEKMVNINQKGVFFMSQAVARQMVKQRAGVIVNVSSESGLEGSEGQSCYAATKAALNSFTRSWSKELGKYGIRVVGVAPGILEKTGLRTPEYEEALAWTRNITVEQLREGYTKNAIPI-GRAGKLSEVADFVCYLLSARASYITGVTTNIAGGKT 265          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.759e-11
Identity = 52/192 (27.08%), Postives = 87/192 (45.31%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            V C V      +  ++  +  H  +DI+ +NA +       ++D  +  + +VLS+NVT   + IK     M     GS++                Y  +K A+LGLTKN A EL    IRVNCL+P  + T    S V   ++  E  +     ++ +  + ED      +L S++A Y++G  + + GG
Sbjct:   68 VVCHVGKAEDREKLVNMALKLHQGIDILVSNAAVNPFFGN-LMDVTEEVWNKVLSINVTASAMMIKAVVPAMEKRGGGSVVIVSSVAGFVLFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTHF--SSVLWKEKAREEMIKETMQIRRLG-KPEDCVGIVSFLCSEDASYINGETVVVGGG 255          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.759e-11
Identity = 51/190 (26.84%), Postives = 84/190 (44.21%), Query Frame = 1
Query:   46 CDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            C V      +  +   V  HG +DI+ +NA +     + I+D  +  +++ L +NV    L  K     M     GS++                Y  +K A+LGLTK  A+EL    IRVNCL+P  + T  +       D++ E  M     ++ +    ED A    +L S++A Y++G  + + GG
Sbjct:   70 CHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGS-IMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRML--WMDKEKEESMKETLRIRRLG-EPEDCAGIVSFLCSEDASYITGETVVVGGG 255          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: PECR_MOUSE (Peroxisomal trans-2-enoyl-CoA reductase OS=Mus musculus GN=Pecr PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.297e-11
Identity = 53/211 (25.12%), Postives = 89/211 (42.18%), Query Frame = 1
Query:   34 SYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDL--EGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTIVNPSLGMFQYPD 660
            S + C++  E  + N +  T+A +GK++ + NN   GG     + D     +  V+  N+TG F   K      +    GSI+                   A+  V  LTK+ A+     G+R+NC++P  + +  A    G   + L    F +  A   GV    E+I+    +L S  A Y++G  + +DGG  +   +   F  PD
Sbjct:   75 SAIQCNIRKEEEVSNLVKSTLAKYGKINFLVNNG--GGQFMAPVEDITAKGWHAVIETNLTGTFYMCKEVYNSWMREHGGSIVNIIVLLNNGFPTAAHT-GAAREGVYNLTKSMALAWASSGVRINCVAPGTIYSQTAVDNYGEMGQTLFEMAFDSIPAKRLGV---PEEISPLVCFLLSPAASYITGQLINVDGGQALYTHA---FSIPD 276          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: PECR_HUMAN (Peroxisomal trans-2-enoyl-CoA reductase OS=Homo sapiens GN=PECR PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.297e-11
Identity = 54/209 (25.84%), Postives = 93/209 (44.50%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDED-LEG-FMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTIVNPSLGMFQYPD 660
            + C++ NE  + N +  T+ T GK++ + NN G    +    I ++   +  VL  N+TG F   K      +    GSI+                   A+  V  LTK+ A+E    GIR+NC++P  + +  A    G   +   EG F    A   GV    E+++    +L S  A +++G ++ +DGG ++   S   ++ PD
Sbjct:   77 IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSK--GWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGFPLAVHS-GAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGV---PEEVSSVVCFLLSPAASFITGQSVDVDGGRSLYTHS---YEVPD 276          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: NODG_AZOBR (Nodulation protein G OS=Azospirillum brasilense GN=nodG PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.297e-11
Identity = 53/189 (28.04%), Postives = 87/189 (46.03%), Query Frame = 1
Query:   49 DVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            DV++    K  + +  A  G +DI+ NNAGI           +KA ++ V++ N++ +F   +  +  M     G I+                Y  AK  V+G TK  A EL   G+ VN ++P  + T +  +      ED+   +  +  +K +  R ++I  A  YLAS+ A YV+G  L I+GG
Sbjct:   61 DVSDFESCKAMVAKIEADLGPVDILVNNAGI--TRDKFFAKMDKAQWDAVIATNLSSLFNVTQQVSPKMAERGWGRIINISSVNGVKGQAGQTNYSAAKAGVIGFTKALAAELATKGVTVNAIAPGYIGTDMVMAI----REDIRQAITDSVPMKRLG-RPDEIGGAVSYLASEIAGYVTGSTLNINGG 242          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: FABG_MYCTU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium tuberculosis GN=fabG PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.297e-11
Identity = 49/192 (25.52%), Postives = 88/192 (45.83%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            V CDVT+   +  A        G ++++ +NAG+        +  EK  FE+V++ N+TG F   + A+R M   + G ++                Y  +K  V+G+ ++ A EL +  +  N ++P  + T +  +     DE ++         K V    E +A    +LAS++A Y+SG  + +DGG
Sbjct:   58 VECDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEK--FEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL----DERIQQGALQFIPAKRVGTPAE-VAGVVSFLASEDASYISGAVIPVDGG 242          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: FABG_MYCBO (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium bovis GN=fabG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.297e-11
Identity = 49/192 (25.52%), Postives = 88/192 (45.83%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            V CDVT+   +  A        G ++++ +NAG+        +  EK  FE+V++ N+TG F   + A+R M   + G ++                Y  +K  V+G+ ++ A EL +  +  N ++P  + T +  +     DE ++         K V    E +A    +LAS++A Y+SG  + +DGG
Sbjct:   58 VECDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEK--FEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL----DERIQQGALQFIPAKRVGTPAE-VAGVVSFLASEDASYISGAVIPVDGG 242          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: KDUD_DICD3 (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Dickeya dadantii (strain 3937) GN=kduD PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.000e-11
Identity = 51/191 (26.70%), Postives = 90/191 (47.12%), Query Frame = 1
Query:   49 DVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIP-ARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGF 618
            D+++ S     +++ VA  GK+DI+ NNAGI    +   I+  + +++ V+++N+  VF   +  AR  I     G I+                Y  +K  V+G+T+  A E  +  I VN ++P  +AT          D   E      A   G+    +D+   A++LAS  + YV+G+ + +DGG+
Sbjct:   65 DMSDISGHAALVEKAVAEFGKVDILVNNAGI--IRREDAIEFSEKNWDDVMNLNIKSVFFMSQTVARQFIKQGHGGKIINIASMLSFQGGIPVPSYTASKKRVMGITRIVANEWAKHNINVNAIAPGYMATNNTQHVRADQDRSKEILDRIPAGRWGLP---QDLQGPAVFLASSASDYVNGYTIAVDGGW 250          
The following BLAST results are available for this feature:
BLAST of DY258873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
Y3106_PSEAE1.346e-1127.67Uncharacterized oxidoreductase PA3106 OS=Pseudomon... [more]
SORD_KLEPN1.346e-1127.52Sorbitol-6-phosphate 2-dehydrogenase OS=Klebsiella... [more]
DHRS4_RAT1.759e-1127.08Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]
DHRS4_HUMAN1.759e-1126.84Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
PECR_MOUSE2.297e-1125.12Peroxisomal trans-2-enoyl-CoA reductase OS=Mus mus... [more]
PECR_HUMAN2.297e-1125.84Peroxisomal trans-2-enoyl-CoA reductase OS=Homo sa... [more]
NODG_AZOBR2.297e-1128.04Nodulation protein G OS=Azospirillum brasilense GN... [more]
FABG_MYCTU2.297e-1125.523-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
FABG_MYCBO2.297e-1125.523-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
KDUD_DICD33.000e-1126.702-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=D... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DD06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258873 ID=DY258873; Name=DY258873; organism=Citrus clementina; type=EST; length=841bp
TCAGTTGTTGAATCCATAGGCACATCAAACTCATCCTATGTCCATTGCGA
TGTCACAAACGAATCCCACATTAAAAATGCAATCGACCAAACCGTTGCAA
CTCATGGCAAGCTGGACATAATGTTCAACAACGCCGGCATAGGCGGCGCT
AACAAGACCCGCATAATCGACAATGAAAAGGCCGATTTCGAGCGTGTCCT
GAGTGTAAATGTCACCGGAGTTTTCTTGGGCATCAAGCATGCTGCTCGTG
TCATGATTCCGGCTCGCAGTGGCAGCATTCTTTCAACTGCTAGCGTTAGC
TCAAGGGTTGGTGCTGCTGCCTCACATGCATACTGTTGTGCAAAACATGC
TGTTTTAGGACTCACCAAAAATGCTGCTGTTGAGCTAGGCCAATTTGGGA
TTAGGGTGAATTGCTTGTCACCTTATGCTCTTGCAACACCTTTGGCTACC
AGTTTTGTTGGGATTACCGATGAGGATCTGGAAGGTTTTATGAATTCAGC
GGCTAACCTTAAGGGTGTGACTTTAAGGACCGAAGATATTGCATATGCAG
CTCTTTATCTAGCGAGTGATGAGGCGAAGTATGTGAGTGGACACAATCTT
TTCATTGACGGAGGTTTCACTATTGTCAATCCCTCCCTCGGAATGTTTCA
GTACCCAGATTCTTGATCGAGTTAGTTAATTTCATCAAGGTTTTTTCCCA
TTTGAGTGGGGAAAAAAAAAACTCTGTTCAAATAATTTCATATTTGATCC
TTGATATCGAATGAAACAAAATTGAACAAGTTTTTTTTCATTCCTAGACT
CCTTAAAAAAGAAATTATTTCCAAAACGAAACCTTGAGTTT
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