DY258873

Overview
NameDY258873
Unique NameDY258873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14971 contig Ccv1_Contig14971:186..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: DHG3_BACME (Glucose 1-dehydrogenase 3 OS=Bacillus megaterium GN=gdhIII PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.371e-16
Identity = 58/197 (29.44%), Postives = 94/197 (47.72%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPAR-SGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPL-ATSFVG-ITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFT 621
            V  DVT E  + N +   +   G LD+M NNAG+     +  +  +  ++ +V+  N+TG FLG + A +  +     G+++                Y  +K  +  +T+  A+E    GIRVN + P A+ TP+ A  F   +   D+E  +       G   + E++A  A +LAS +A YV+G  LF DGG T
Sbjct:   62 VQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLD--NWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKQMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPVQRADVESMIPM-----GYIGKPEEVAAVAAFLASSQASYVTGITLFADGGMT 251          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: BDH2_BOVIN (3-hydroxybutyrate dehydrogenase type 2 OS=Bos taurus GN=BDH2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.371e-16
Identity = 58/186 (31.18%), Postives = 93/186 (50.00%), Query Frame = 1
Query:   73 KNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXX-YCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLK-GVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTI 624
            K  IDQ      +LD++FN AG    +   I+D E+ D++  +++NV  ++L IK     M+  +SG+I+                 Y   K AV+GLTK+ A +  Q GIR NC+ P  + TP     +       E   +     K G     E++A   +YLASDE+ Y++G+ + IDGG+++
Sbjct:   62 KKQIDQFANDIERLDVLFNVAGF--VHHGTILDCEETDWDFSMNLNVRSMYLMIKAFLPKMMAQKSGNIINMSSVASSIKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARPNPEEALSDFLKRQKTGRFATAEEVALLCVYLASDESAYITGNPVIIDGGWSL 245          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: FABG_CHLTR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia trachomatis GN=fabG PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 3.097e-16
Identity = 58/201 (28.86%), Postives = 94/201 (46.77%), Query Frame = 1
Query:   34 SYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAAN---LKGVTL----RTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            S+   DV+    +   +   +A +  +D++ NNAGI       ++   + ++  V++ N+  ++       R MI ARSG+I+                Y  AK  ++G +K  + E+G   IRVNC++P            G  D D+   +N       LKGV L      E+IA AAL+LASD + Y++G  L +DGG
Sbjct:   60 SFALVDVSKNDMVSAQVQNFLAEYNTIDVIVNNAGI--TRDALLMRMSEEEWSSVINTNLGSIYNVCSAVIRPMIKARSGAIINISSIVGLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAP------------GFIDTDMTKSLNDNLKNEWLKGVPLGRVGMPEEIAKAALFLASDGSSYITGQVLSVDGG 246          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: UCPA_ECO57 (Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN=ucpA PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.045e-16
Identity = 63/201 (31.34%), Postives = 97/201 (48.26%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSI-LXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITD-EDLEGFMNSAANLKGVTLR----TEDIAYAALYLASDEAKYVSGHNLFIDGGFTI 624
            V  DV + + +  AI +     G++DI+ NNAG+        + ++  DF   + +N+ GV+   K     MI  + G I +                Y   K A++GLTK+ AVE  Q GIRVN + P  + TP+A S    ++ ED E  +   A  K + LR      ++   A +LASDE+ Y++G    IDGG T+
Sbjct:   59 VVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDDDRDFH--IDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMA--KAIPLRRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTL 255          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: DHG4_BACME (Glucose 1-dehydrogenase 4 OS=Bacillus megaterium GN=gdhIV PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.045e-16
Identity = 58/197 (29.44%), Postives = 94/197 (47.72%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPAR-SGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPL-ATSFVG-ITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFT 621
            V  DVT E  + N +   +   G LD+M NNAG+     +  +  +  ++ +V+  N+TG FLG + A +  +     G+++                Y  +K  +  +T+  A+E    GIRVN + P A+ TP+ A  F   +   D+E  +       G   + E++A  A +LAS +A YV+G  LF DGG T
Sbjct:   62 VQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLD--NWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPVQRADVESMIPM-----GYIGKPEEVAAVAAFLASSQASYVTGITLFADGGMT 251          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: FABG_RICBR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia bellii (strain RML369-C) GN=fabG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.283e-16
Identity = 57/194 (29.38%), Postives = 92/194 (47.42%), Query Frame = 1
Query:   46 CDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTIV 627
            C++TN     N + Q      KLDI+  NAGI     T  I  +  DF++V+ +N+   F+  + A + M+  R G I+                YC +K  ++G+TK+ A E+   GI VN ++P  + + +      + DE  E         KG     EDIA A  +LAS ++ Y++G  L ++GG  +V
Sbjct:   59 CNLTNTEECSNLVAQIE----KLDILVCNAGI--TKDTLAIRMKNEDFDQVIDINLKANFILNREAIKKMMTNRYGRIINITSIVGVSGNPGQANYCASKAGLIGMTKSLAYEVATRGITVNAVAPGFIKSDMTDK---LNDEQKEAITRKIP--KGTYGMPEDIANAVAFLASKQSSYITGQTLHVNGGMLMV 241          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: DHGA_BACME (Glucose 1-dehydrogenase A OS=Bacillus megaterium GN=gdhA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.283e-16
Identity = 56/195 (28.72%), Postives = 92/195 (47.18%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPAR-SGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFT 621
            V  DVT E  + N +   +   G LD+M NNAG+     +  +  +  ++ +V+  N+TG FLG + A +  +     G+++                Y  +K  +  +T+  A+E    GIRVN + P A+ TP+        D +    + S   + G   + E++A  A +LAS +A YV+G  LF DGG T
Sbjct:   62 VQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLD--NWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAE--KFADPEQRADVESMIPM-GYIGKPEEVAAVAAFLASSQASYVTGITLFADGGMT 251          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 60/193 (31.09%), Postives = 94/193 (48.70%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSF-VGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            V CDVT    +   I   V   G LD+M NNAGI      R +  E+  F++V++V++ G + G + AA +M   + G+I+                Y  AK  ++G+TK AA EL   GIRVN ++P  + + +  +    I D+ L      A    G      ++A  A++LASD + Y++G  L + GG
Sbjct:   60 VRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDATMRTMTEEQ--FDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQRIWDQKL------AEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGG 244          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350/MT1393 OS=Mycobacterium tuberculosis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 60/193 (31.09%), Postives = 94/193 (48.70%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSF-VGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            V CDVT    +   I   V   G LD+M NNAGI      R +  E+  F++V++V++ G + G + AA +M   + G+I+                Y  AK  ++G+TK AA EL   GIRVN ++P  + + +  +    I D+ L      A    G      ++A  A++LASD + Y++G  L + GG
Sbjct:   60 VRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDATMRTMTEEQ--FDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQRIWDQKL------AEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGG 244          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: UCPA_ECOLI (Oxidoreductase ucpA OS=Escherichia coli (strain K12) GN=ucpA PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 62/201 (30.85%), Postives = 97/201 (48.26%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSI-LXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITD-EDLEGFMNSAANLKGVTLR----TEDIAYAALYLASDEAKYVSGHNLFIDGGFTI 624
            V  DV + + +  AI +     G++DI+ NNAG+        + ++  DF   + +N+ GV+   K     MI  + G I +                Y   K A++GLTK+ AVE  Q GIRVN + P  + TP+A S    ++ ED E  +   A  K + +R      ++   A +LASDE+ Y++G    IDGG T+
Sbjct:   59 VVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDDDRDFH--IDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMA--KAIPMRRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTL 255          
The following BLAST results are available for this feature:
BLAST of DY258873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
DHG3_BACME2.371e-1629.44Glucose 1-dehydrogenase 3 OS=Bacillus megaterium G... [more]
BDH2_BOVIN2.371e-1631.183-hydroxybutyrate dehydrogenase type 2 OS=Bos taur... [more]
FABG_CHLTR3.097e-1628.863-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
UCPA_ECO574.045e-1631.34Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN... [more]
DHG4_BACME4.045e-1629.44Glucose 1-dehydrogenase 4 OS=Bacillus megaterium G... [more]
FABG_RICBR5.283e-1629.383-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
DHGA_BACME5.283e-1628.72Glucose 1-dehydrogenase A OS=Bacillus megaterium G... [more]
Y1385_MYCBO6.899e-1631.09Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]
Y1350_MYCTU6.899e-1631.09Uncharacterized oxidoreductase Rv1350/MT1393 OS=My... [more]
UCPA_ECOLI6.899e-1630.85Oxidoreductase ucpA OS=Escherichia coli (strain K1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DD06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258873 ID=DY258873; Name=DY258873; organism=Citrus clementina; type=EST; length=841bp
TCAGTTGTTGAATCCATAGGCACATCAAACTCATCCTATGTCCATTGCGA
TGTCACAAACGAATCCCACATTAAAAATGCAATCGACCAAACCGTTGCAA
CTCATGGCAAGCTGGACATAATGTTCAACAACGCCGGCATAGGCGGCGCT
AACAAGACCCGCATAATCGACAATGAAAAGGCCGATTTCGAGCGTGTCCT
GAGTGTAAATGTCACCGGAGTTTTCTTGGGCATCAAGCATGCTGCTCGTG
TCATGATTCCGGCTCGCAGTGGCAGCATTCTTTCAACTGCTAGCGTTAGC
TCAAGGGTTGGTGCTGCTGCCTCACATGCATACTGTTGTGCAAAACATGC
TGTTTTAGGACTCACCAAAAATGCTGCTGTTGAGCTAGGCCAATTTGGGA
TTAGGGTGAATTGCTTGTCACCTTATGCTCTTGCAACACCTTTGGCTACC
AGTTTTGTTGGGATTACCGATGAGGATCTGGAAGGTTTTATGAATTCAGC
GGCTAACCTTAAGGGTGTGACTTTAAGGACCGAAGATATTGCATATGCAG
CTCTTTATCTAGCGAGTGATGAGGCGAAGTATGTGAGTGGACACAATCTT
TTCATTGACGGAGGTTTCACTATTGTCAATCCCTCCCTCGGAATGTTTCA
GTACCCAGATTCTTGATCGAGTTAGTTAATTTCATCAAGGTTTTTTCCCA
TTTGAGTGGGGAAAAAAAAAACTCTGTTCAAATAATTTCATATTTGATCC
TTGATATCGAATGAAACAAAATTGAACAAGTTTTTTTTCATTCCTAGACT
CCTTAAAAAAGAAATTATTTCCAAAACGAAACCTTGAGTTT
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