DY258873

Overview
NameDY258873
Unique NameDY258873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14971 contig Ccv1_Contig14971:186..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: YXJF_BACSU (Uncharacterized oxidoreductase yxjF OS=Bacillus subtilis GN=yxjF PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.011e-16
Identity = 62/199 (31.16%), Postives = 98/199 (49.25%), Query Frame = 1
Query:   49 DVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGIT--------DEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFT 621
            DVT E+ + + ++     +G+LDI+ NNAGI   +   I +     FE+++ V +T  F+ +KH   +M   + G I+                Y  AKH V+GLTK  A+E    GI VN L P  + T L  + +           D  LE  +      K + L  ++IA  A++LAS++AK V+G  + +DGG+T
Sbjct:   60 DVTKEAQVADTVNVIQKQYGRLDILVNNAGI--QHVAPIEEFPTDTFEQLIKVMLTAPFIAMKHVFPIMKKQQFGRIINIASVNGLVGFAGKSAYNSAKHGVIGLTKVGALEGAPHGITVNALCPGYVDTQLVRNQLSDLSKTRNVPYDSVLEQVIFPLVPQKRL-LSVKEIADYAVFLASEKAKGVTGQAVVLDGGYT 255          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: FABG_RICPR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia prowazekii GN=fabG PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.011e-16
Identity = 58/201 (28.86%), Postives = 96/201 (47.76%), Query Frame = 1
Query:   46 CDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSA---ANLKGVTLRT----EDIAYAALYLASDEAKYVSGHNLFIDGGFTIV 627
            C++ N+    N I +T      LDI+  NAGI   + T  I  +  DF++V+ +N+   F+  + A + MI  R G I+                YC +K  ++G+TK+ + E+   GI VN ++P            G    D+   +N     A ++ + L T    ED+AYA  +LAS+ A Y++G  L ++GG  +V
Sbjct:   59 CNLANKEECSNLISKT----SNLDILVCNAGI--TSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAP------------GFIKSDMTDKLNEKQREAIVQKIPLGTYGIPEDVAYAVAFLASNNASYITGQTLHVNGGMLMV 241          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: Y4MP_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4mP OS=Rhizobium sp. (strain NGR234) GN=NGR_a02430 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.177e-15
Identity = 68/205 (33.17%), Postives = 101/205 (49.27%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPAR----SGSI--LXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLR----TEDIAYAALYLASDEAKYVSGHNLFIDGGFTI 624
            + CDV + +   +A D+ ++  G  +I+ NNAGI    KT  +D   AD++R+++VN+TGV     + ++V IP       GSI  +                Y  AK  VLGL K  A E G   IRVNC++P  + T        IT + L   M  A  +KG+ L       D+A   L+LASD + YV+G  + ++GG  I
Sbjct:   62 LRCDVADRASCTSASDEVLSAFGVANILINNAGITQPVKT--LDISDADWQRIVAVNMTGVL----NLSQVFIPNMRQNGGGSIACMSSVSAQRGGGIFGGPHYSAAKAGVLGLAKAMAREFGPDSIRVNCVTPGLIQT-------DITGDKLSAEMR-ADIVKGIPLSRLGDARDVANIYLFLASDLSAYVTGAVIDVNGGMLI 252          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: FABG1_SYNY3 (3-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Synechocystis sp. (strain PCC 6803) GN=fabG1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.177e-15
Identity = 56/200 (28.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query:   40 VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTL----RTEDIAYAALYLASD-EAKYVSGHNLFIDGGFTI 624
            V  +V N   +   I  T+    ++D++ NNAGI     T ++  +  D++ V+ +N+TGVFL  K  +++M+  +SG I+                Y  AK  V+G TK  A EL   G+ VN ++P  +AT            D+   +N+   L+ + L    + E++A    +LA+D  A Y++G    +DGG  +
Sbjct:   61 VQANVANADEVDQLIKTTLDKFSRIDVLVNNAGI--TRDTLLLRMKLEDWQAVIDLNLTGVFLCTKAVSKLMLKQKSGRIINITSVAGMMGNPGQANYSAAKAGVIGFTKTVAKELASRGVTVNAVAPGFIAT------------DMTENLNAEPILQFIPLARYGQPEEVAGTIRFLATDPAAAYITGQTFNVDGGMVM 246          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: YKVO_BACSU (Uncharacterized oxidoreductase ykvO OS=Bacillus subtilis GN=ykvO PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.537e-15
Identity = 67/208 (32.21%), Postives = 95/208 (45.67%), Query Frame = 1
Query:    7 VESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVG-ITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTIV 627
            V  IG  N + V  D++    +    D      GKLDI+F NAGIG       I  E+ D  R   +NV G    ++ A   + P + GSI+                Y  +K A+  L +N  ++L    IRVN +SP  + TP      G   +E LE   N+    K  T   E++A A  +LASDE+ Y++G  LF+DGG   V
Sbjct:   47 VNQIG-KNVTGVQGDISKLEDLDKLYDIIKQEKGKLDILFANAGIGNFLPLGEITEEQVD--RTFDINVKGTIFTVQKALS-LFPDKVGSIIVTGSTAGSIGNPAFSVYGASKAALRALVRNWILDLKGTEIRVNVVSPGGILTPAYDELFGDALEEVLENSRNTVPAGKVGT--PEEVANAVSFLASDESSYLTGVELFVDGGLAQV 248          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: FABG_SHIFL (3-oxoacyl-[acyl-carrier-protein] reductase OS=Shigella flexneri GN=fabG PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.537e-15
Identity = 57/203 (28.08%), Postives = 102/203 (50.25%), Query Frame = 1
Query:   25 SNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNS--AANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTIV 627
            +N   +  +VT+ + I++ +++  A  G++DI+ NNAGI   N    + +E  ++  ++  N++ VF   K   R M+  R G I+                Y  AK  ++G +K+ A E+   GI VN ++P  + T +  +   ++D+   G +    A  L G     ++IA A  +LASDEA Y++G  L ++GG  +V
Sbjct:   51 ANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDE--EWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRA---LSDDQRAGILAQVPAGRLGGA----QEIANAVAFLASDEAAYITGETLHVNGGMYMV 244          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: FABG_SALTY (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhimurium GN=fabG PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.537e-15
Identity = 60/204 (29.41%), Postives = 102/204 (50.00%), Query Frame = 1
Query:   25 SNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKT-RIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNS--AANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTIV 627
            +N   +  +VT+ + I++ ++   A  G++DI+ NNAGI   N   R+ D+E  D   ++  N++ VF   K   R M+  R G I+                Y  AK  ++G +K+ A E+   GI VN ++P  + T +  +   ++D+   G +    A  L G     ++IA A  +LASDEA Y++G  L ++GG  +V
Sbjct:   51 ANGKGLMLNVTDPASIESVLENIRAEFGEVDILVNNAGITRDNLLMRMKDDEWND---IIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRA---LSDDQRAGILAQVPAGRLGGA----QEIASAVAFLASDEASYITGETLHVNGGMYMV 244          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: FABG_SALTI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhi GN=fabG PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.537e-15
Identity = 60/204 (29.41%), Postives = 102/204 (50.00%), Query Frame = 1
Query:   25 SNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKT-RIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNS--AANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTIV 627
            +N   +  +VT+ + I++ ++   A  G++DI+ NNAGI   N   R+ D+E  D   ++  N++ VF   K   R M+  R G I+                Y  AK  ++G +K+ A E+   GI VN ++P  + T +  +   ++D+   G +    A  L G     ++IA A  +LASDEA Y++G  L ++GG  +V
Sbjct:   51 ANGKGLMLNVTDPASIESVLENIRAEFGEVDILVNNAGITRDNLLMRMKDDEWND---IIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRA---LSDDQRAGILAQVPAGRLGGA----QEIASAVAFLASDEASYITGETLHVNGGMYMV 244          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: FABG_ECOLI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Escherichia coli (strain K12) GN=fabG PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.537e-15
Identity = 57/203 (28.08%), Postives = 102/203 (50.25%), Query Frame = 1
Query:   25 SNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNS--AANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTIV 627
            +N   +  +VT+ + I++ +++  A  G++DI+ NNAGI   N    + +E  ++  ++  N++ VF   K   R M+  R G I+                Y  AK  ++G +K+ A E+   GI VN ++P  + T +  +   ++D+   G +    A  L G     ++IA A  +LASDEA Y++G  L ++GG  +V
Sbjct:   51 ANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDE--EWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRA---LSDDQRAGILAQVPAGRLGGA----QEIANAVAFLASDEAAYITGETLHVNGGMYMV 244          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: Y019_THEMA (Uncharacterized oxidoreductase TM_0019 OS=Thermotoga maritima GN=TM_0019 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.622e-15
Identity = 56/198 (28.28%), Postives = 97/198 (48.99%), Query Frame = 1
Query:   34 SYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDE-AKYVSGHNLFIDGGFTI 624
            ++V  DV +E+ +KN + +TV  +G +D++ NNA +       I +    ++ERV+ VN+TG ++  ++ A  MI    G I+                Y  +K  ++ LT + AV L ++ IRV  +SP  + T            DL   ++   +  G      DIA+  ++LA DE A +++G N  +DGG T+
Sbjct:   56 TFVKTDVADENSVKNMVRKTVEIYGGVDVLVNNAAVMSVKS--IFERPLEEWERVIRVNLTGPYICSRYCAEEMIKRGGGVIINIASTRAFQSEPDTEPYSASKGGLVALTHSLAVSLSRYHIRVVSISPGWIETSEWKKKSLRKKPDLRP-IDHEQHPAGRVGNPLDIAHLCVFLADDEKAGFITGTNFIVDGGMTV 250          
The following BLAST results are available for this feature:
BLAST of DY258873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
YXJF_BACSU9.011e-1631.16Uncharacterized oxidoreductase yxjF OS=Bacillus su... [more]
FABG_RICPR9.011e-1628.863-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
Y4MP_RHISN1.177e-1533.17Uncharacterized short-chain type dehydrogenase/red... [more]
FABG1_SYNY31.177e-1528.003-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Sy... [more]
YKVO_BACSU1.537e-1532.21Uncharacterized oxidoreductase ykvO OS=Bacillus su... [more]
FABG_SHIFL1.537e-1528.083-oxoacyl-[acyl-carrier-protein] reductase OS=Shig... [more]
FABG_SALTY1.537e-1529.413-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]
FABG_SALTI1.537e-1529.413-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]
FABG_ECOLI1.537e-1528.083-oxoacyl-[acyl-carrier-protein] reductase OS=Esch... [more]
Y019_THEMA2.622e-1528.28Uncharacterized oxidoreductase TM_0019 OS=Thermoto... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DD06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258873 ID=DY258873; Name=DY258873; organism=Citrus clementina; type=EST; length=841bp
TCAGTTGTTGAATCCATAGGCACATCAAACTCATCCTATGTCCATTGCGA
TGTCACAAACGAATCCCACATTAAAAATGCAATCGACCAAACCGTTGCAA
CTCATGGCAAGCTGGACATAATGTTCAACAACGCCGGCATAGGCGGCGCT
AACAAGACCCGCATAATCGACAATGAAAAGGCCGATTTCGAGCGTGTCCT
GAGTGTAAATGTCACCGGAGTTTTCTTGGGCATCAAGCATGCTGCTCGTG
TCATGATTCCGGCTCGCAGTGGCAGCATTCTTTCAACTGCTAGCGTTAGC
TCAAGGGTTGGTGCTGCTGCCTCACATGCATACTGTTGTGCAAAACATGC
TGTTTTAGGACTCACCAAAAATGCTGCTGTTGAGCTAGGCCAATTTGGGA
TTAGGGTGAATTGCTTGTCACCTTATGCTCTTGCAACACCTTTGGCTACC
AGTTTTGTTGGGATTACCGATGAGGATCTGGAAGGTTTTATGAATTCAGC
GGCTAACCTTAAGGGTGTGACTTTAAGGACCGAAGATATTGCATATGCAG
CTCTTTATCTAGCGAGTGATGAGGCGAAGTATGTGAGTGGACACAATCTT
TTCATTGACGGAGGTTTCACTATTGTCAATCCCTCCCTCGGAATGTTTCA
GTACCCAGATTCTTGATCGAGTTAGTTAATTTCATCAAGGTTTTTTCCCA
TTTGAGTGGGGAAAAAAAAAACTCTGTTCAAATAATTTCATATTTGATCC
TTGATATCGAATGAAACAAAATTGAACAAGTTTTTTTTCATTCCTAGACT
CCTTAAAAAAGAAATTATTTCCAAAACGAAACCTTGAGTTT
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