DY258880

Overview
NameDY258880
Unique NameDY258880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1224
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1277 contig Ccv1_Contig1277:1..1224. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258880 vs. ExPASy Swiss-Prot
Match: CALSC_ARATH (Callose synthase 12 OS=Arabidopsis thaliana GN=CALS12 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 7.913e-60
Identity = 115/293 (39.25%), Postives = 177/293 (60.41%), Query Frame = 2
Query:    2 SRSHFVKGIEMMILLIVYQIFGQSYRGAVAYILITISMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWNKWISNRGGIGVPPXXXXXXXXXXXXXHLQHSGKRGIIAEIVLALRFFIYQYGLVYHLKMTKHTKSFLVYGVSWLVIFLVLFVMKTVSVGRRKFSANFQLVFRLIKGLIFLTFISILVTLIALPHMTVRDIIVCILAFMPTGWGMLLIAQALKPVI-HRAGFWGSVRTLARGYEIVMGLLLFTPVAFLACFLFVSKFQTRMLFNQAFHKRSTDLFVILGGQRKG 877
            +RSHFVK IE+ ++LIVY       + ++ YI +TI+ WF+V +W+ APF+FNPSGF+W K V D+ D+  WI  +G I                 HL+++GK G+  EI+L LRFF +QYG+VY LK+   + S  VY  SW+ IF +  +   +   R K+SA   + +RL++ L+ +  I ++V L+   H +  DI   +LAF+PTGWG+LLIAQ  +  + +   FW +V ++AR Y+I+ G+L+  PVAFL+        QTR+LFN+AF +    + ++ G + KG
Sbjct: 1486 ARSHFVKAIELGLILIVYASHSPIAKDSLIYIAMTITSWFLVISWIMAPFVFNPSGFDWLKTVYDFEDFMNWIWYQGRISTKSEQSWEKWWYEEQDHLRNTGKAGLFVEIILVLRFFFFQYGIVYQLKIANGSTSLFVYLFSWIYIFAIFVLFLVIQYARDKYSAKAHIRYRLVQFLLIVLAILVIVALLEFTHFSFIDIFTSLLAFIPTGWGILLIAQTQRKWLKNYTIFWNAVVSVARMYDILFGILIMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIMQIVTGKKSKG 1778          
BLAST of DY258880 vs. ExPASy Swiss-Prot
Match: CALSB_ARATH (Callose synthase 11 OS=Arabidopsis thaliana GN=CALS11 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.545e-58
Identity = 107/290 (36.90%), Postives = 179/290 (61.72%), Query Frame = 2
Query:    2 SRSHFVKGIEMMILLIVYQIFGQSYRGAVAYILITISMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWNKWISNRGGIGVPPXXXXXXXXXXXXXHLQHSGKRGIIAEIVLALRFFIYQYGLVYHLKMTKHTKSFLVYGVSWLVIFLVLFVMKTVSVGRRKFSANFQLVFRLIKGLIFLTFISILVTLIALPHMTVRDIIVCILAFMPTGWGMLLIAQALKPVIHRAGFWGSVRTLARGYEIVMGLLLFTPVAFLACFLFVSKFQTRMLFNQAFHKRSTDLFVILGGQR 871
            +R+HF+K IE+ I+L+VY  +    + +  YIL+TIS WF++ +W+ +PFLFNPSGF+W K V+D+ D+  W+ +RGG+                 HL+ +G  G + EI+L LRFF +QY +VYHL++ ++  S  VY +SW  I  ++ +  T    ++++S    + +R I+ L+ L  + ++V ++    +TV D+++ +LAF+PTGWG++ IAQ LKP +     W +V ++AR Y++  GL++  PVA L+        QTR+LFN+AF  R   + +IL G++
Sbjct: 1478 ARTHFIKAIELAIILLVYAAYSPLAKSSFVYILMTISSWFLITSWIISPFLFNPSGFDWLKTVNDFDDFIAWLWSRGGLFTKADQSWFTWWNEEQEHLKTTGVWGKLLEIILDLRFFFFQYSIVYHLRIAENRTSIGVYLISWGCIIGIVAIYITTIYAQKRYSVKEHIKYRFIQFLVILLTVLVVVMMLQFTKLTVVDLLISLLAFVPTGWGLISIAQVLKPFLLSTVVWDTVISVARFYDLFFGLIVMAPVALLSWLPGFQNMQTRILFNEAF-SRGLQISIILAGKK 1766          
The following BLAST results are available for this feature:
BLAST of DY258880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CALSC_ARATH7.913e-6039.25Callose synthase 12 OS=Arabidopsis thaliana GN=CAL... [more]
CALSB_ARATH2.545e-5836.90Callose synthase 11 OS=Arabidopsis thaliana GN=CAL... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DE04FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258880 ID=DY258880; Name=DY258880; organism=Citrus clementina; type=EST; length=1224bp
CTCGCGTAGTCACTTTGTTAAGGGTATCGAGATGATGATATTGCTTATTG
TGTACCAAATCTTTGGTCAATCTTACAGAGGTGCAGTTGCTTACATCTTA
ATCACAATATCTATGTGGTTTATGGTGGGAACTTGGCTTTTTGCTCCTTT
CTTGTTCAATCCTTCTGGTTTTGAGTGGCAAAAGATTGTTGATGATTGGA
CTGATTGGAATAAGTGGATAAGTAACCGAGGAGGCATAGGTGTACCACCT
GAGAAAAGTTGGGAATCATGGTGGGAGGAAGAACAGGAGCATCTCCAGCA
CTCTGGAAAGCGTGGTATCATAGCTGAGATAGTGTTAGCTTTAAGGTTCT
TTATCTATCAGTATGGACTCGTGTACCATTTGAAAATGACAAAGCACACT
AAAAGTTTTCTGGTCTACGGTGTATCATGGCTGGTGATCTTTCTTGTATT
GTTTGTGATGAAGACTGTATCTGTTGGGCGGCGAAAGTTCAGTGCAAATT
TCCAACTCGTGTTCCGACTGATAAAGGGATTGATATTTTTGACTTTCATC
TCCATCCTGGTCACTTTGATTGCACTTCCACACATGACAGTGCGCGACAT
CATTGTGTGTATTCTCGCATTCATGCCCACTGGTTGGGGAATGCTTTTGA
TTGCACAAGCTTTGAAGCCTGTTATTCACCGAGCTGGATTCTGGGGATCA
GTTAGGACACTTGCTCGTGGCTACGAGATTGTTATGGGTTTGCTTCTGTT
CACCCCAGTTGCGTTCCTTGCTTGTTTTCTTTTTGTGTCAAAATTCCAGA
CTCGTATGCTCTTCAACCAAGCATTCCACAAGAGGTCTACCGATCTCTTC
GTAATTCTTGGCGGGCAACGGAAAGGATCGTTCCTCCTCGTAACAAGGAG
TTAAATTGAAGGATAAGCCAAACCAAAAATCTGTTGGTAATTTTTGTTAA
TCACCTCCTCCATTGTTTTAAAAAAAATTGTTCCATTAATTTTATTTTTT
TATCCCTTCCGCCGTTTGTTTTGAAATCCATGAATGAACGTCCTGGGGGG
GCCCCCTTTTTTTTTGATAAATTAAATTTGATTTTGTAAAGGCTCCCGGG
CACCCCCCCACAACCCCGTGTCCTCTTTTTTGTATTTTGGTTTCACAAAA
ATTTTTTTTTATAATATTTTATATATTTTTTTTTTTTATTAAATCCCTTT
TTTTATTTTTCTTTTTTTTTTTTG
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