DY258881

Overview
NameDY258881
Unique NameDY258881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_KLULA (ATP-dependent RNA helicase DED1 OS=Kluyveromyces lactis GN=DED1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.797e-31
Identity = 83/229 (36.24%), Postives = 134/229 (58.52%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE--RLP--QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  ++LAPTRELA Q+  E  +      +  + VYGG  I +Q++ + YG + +V TPGR+ DL++R  ++L+ V+++VLDEAD+ML +GF   +  I+E   +P   NRQ +MFSAT P  I+ L + +LK+   L+V  VG + + +   I    +    ++K   +  L+   +  G  ++F +TKR AD L    + + +    +HGD +Q +RER LSAF+ GR
Sbjct:  243 PTAVILAPTRELATQIYDEAKKFTYRSWVKPMVVYGGASIDNQIKQMRYGCNLLVATPGRLTDLLERRYISLANVKYLVLDEADRMLDMGFEPQIRRIVEGSDMPSVDNRQTLMFSATFPSEIQHLASDFLKDYVFLSVGRVGSTSENITQKI----LYVEDFDKNDTLLDLLAA-SNEGLTLIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERERALSAFKTGR 466          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_YEAST (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae GN=DED1 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.149e-30
Identity = 81/228 (35.53%), Postives = 133/228 (58.33%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----NRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDG 662
            P  +++APTRELA Q+  E  +      +    VYGG+PI +Q+R ++ G D +V TPGR+ DL++R  ++L+ V+++VLDEAD+ML +GF   +  I+E         RQ +MFSAT P  I+ L   +L +   L+V  VG + + +   +    +     +K S +  L++  +  G  ++F +TKR AD+L    + +++    +HGD +QS+RER L+AFR G
Sbjct:  226 PTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKV----LYVENQDKKSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSG 448          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_YEAS7 (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DED1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.149e-30
Identity = 81/228 (35.53%), Postives = 133/228 (58.33%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----NRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDG 662
            P  +++APTRELA Q+  E  +      +    VYGG+PI +Q+R ++ G D +V TPGR+ DL++R  ++L+ V+++VLDEAD+ML +GF   +  I+E         RQ +MFSAT P  I+ L   +L +   L+V  VG + + +   +    +     +K S +  L++  +  G  ++F +TKR AD+L    + +++    +HGD +QS+RER L+AFR G
Sbjct:  226 PTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKV----LYVENQDKKSALLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSG 448          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX43_HUMAN (Probable ATP-dependent RNA helicase DDX43 OS=Homo sapiens GN=DDX43 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.149e-30
Identity = 87/222 (39.19%), Postives = 118/222 (53.15%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  LVL PTRELA QVE E  + S   L ++CVYGG     Q+  L  GVD ++ TPGR+ DL   N +NL  + ++VLDEAD+ML +GF   +  IL  +  +RQ +M SAT P  +  L   YLK P+ V  VG  D      +    I T+  EK S +   +   +   K IVF   K  AD L +  +  + + E LHGD  Q  RE+ L  F+ G+
Sbjct:  317 PGMLVLTPTRELALQVEGECCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATWPHSVHRLAQSYLKEPMIV-YVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGK 537          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP3_SCLS1 (ATP-dependent RNA helicase dbp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp3 PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.149e-30
Identity = 80/231 (34.63%), Postives = 128/231 (55.41%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD-------SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 662
            P  +V++PTRELA Q  ++  +   A  L+ +CVYGG P   Q+RAL    D VV TPGR+ DLI +   +LS+ ++VVLDEAD+ML  GF E++  I+   P    RQ +MF+AT P  +R L + ++ +P+ +  +GD       ++ ++   + +       Y    ++ Q  +   K  + +VF   K++A R+      K +    +HGD+SQ QR R+L AF+ G
Sbjct:  253 PRAVVVSPTRELAMQSYEQIVKLAKASGLECVCVYGGVPKDEQIRALKTA-DIVVATPGRLNDLINQGCADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSLGKRQTLMFTATWPESVRELASTFMTSPVKI-AIGDNPTGDLRANSRIVQKVEVVEPRDKEYRLMQLLKQYQSGSQKDDRILVFCLYKKEATRVEGFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSG 481          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP3_ASPTN (ATP-dependent RNA helicase dbp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.149e-30
Identity = 76/226 (33.63%), Postives = 132/226 (58.41%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGG-KCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            P+ ++++PTRELA Q+  +  + A  +     C++GG     Q   L    + VV TPGR+ DL    +++L +V+++VLDEAD+ML  GF +D++ I++ +P   RQ +MF+AT PP +R L + ++ +P+TV + GD  +D +    I         +EK   + QL+ +H +G  K + F   K++A R+   + ++ +    +HGD+SQ +R R+L AF+ G
Sbjct:  153 PMAVIISPTRELAMQIHDQLQKFAGPVGAKVACIFGGVRKDEQREVLKTA-NIVVATPGRLKDLQNDGSVDLGKVRYLVLDEADRMLDKGFEQDIKDIIQPMPVSKRQTVMFTATWPPVVRELASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKEGRLVQLLKQHQRGAEKVLAFCLYKKEATRIERFLQSRGFKVAGIHGDLSQQERFRSLDAFKTG 377          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP2_SCLS1 (ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.149e-30
Identity = 81/225 (36.00%), Postives = 128/225 (56.89%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ LVLAPTRELA Q+++E  +   S  +   CVYGG P   Q+R L  GV+  + TPGR+ID+I+    NL  V ++VLDEAD+ML +GF   +  IL ++  +RQ  M+SAT P  +R+L + YL + + V+ +G  +      I       S +EK   + + + +    K  K ++FT TKR AD +   + +  +    +HGD  Q++R+  L+ F+ G+
Sbjct:  223 PIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNDFIQVN-IGSLELSANHRITQIVEVVSEFEKRDKMTKHLEKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 446          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_USTMA (ATP-dependent RNA helicase DED1 OS=Ustilago maydis GN=DED1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.501e-30
Identity = 84/229 (36.68%), Postives = 128/229 (55.90%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--ERLP--QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGR 665
            P  L+LAPTREL  Q+  E  +      +    VYGG  I  Q+R ++ G D +  TPGR++DL++R  ++LS V+F+VLDEAD+ML +GF   +  I+  E +P   +RQ +MFSAT P  I+ L   +LK    L+V  VG + + +   I          +K S++  ++     GG  ++F +TKR AD L+  + +S      +HGD +Q +RER L  FR G+
Sbjct:  276 PSTLILAPTRELVSQIHDEARKFTYRSWVKPAVVYGGADIVTQLRQIERGCDLLSATPGRLVDLMERGRISLSNVRFLVLDEADRMLDMGFEPQIRRIVEGEDMPGVMDRQTLMFSATFPRDIQLLAKDFLKEYVFLSVGRVGSTSENITQKIEY----VEDDDKRSVLLDVLASMPSGGLTLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRERERALELFRSGK 500          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_DEBHA (ATP-dependent RNA helicase DED1 OS=Debaryomyces hansenii GN=DED1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.501e-30
Identity = 87/232 (37.50%), Postives = 134/232 (57.76%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESA------PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP----QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            P  LV+APTREL  Q+  E  + A      PS+    VYGG  I  Q+R L+ G D +V TPGR+ DL++R  ++L+ ++++VLDEAD+ML +GF   +  I++       ++RQ +MFSAT P  I+ L   +LK    L+V  VG + + +   I    +     EK S++  L++ +   G  I+FT+TKR AD LA  +  + +    +HGD SQ +RE+ L+AF+ G
Sbjct:  240 PTALVMAPTRELVSQIFDEAKKFAYRSWVRPSV----VYGGADIGGQIRNLERGCDLLVATPGRLKDLLERGRVSLASIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVEDRQTLMFSATFPKEIQFLARDFLKEYIFLSVGRVGSTSENITQKI----LYVEDEEKKSVLLDLLSAN-DNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKTG 462          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX46_DANRE (Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.501e-30
Identity = 80/225 (35.56%), Postives = 125/225 (55.56%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN---ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDG 662
            PL +++ PTRELA Q+ KE  + + SL    +CVYGGT IS Q+  L  G + +V TPGR+ID++  N     NL  V +VV+DEAD+M  +GF   V  I++ +  +RQ +MFSAT P  + +L  + L  P+ V + G S   +   +  + I     +K   + +++  + + G  I+F   +  AD L   + K SY C  LHG I Q  R+  ++ F++G
Sbjct:  414 PLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTMEALARRILSKPVEVQVGGRS--VVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNG 636          
The following BLAST results are available for this feature:
BLAST of DY258881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DED1_KLULA8.797e-3136.24ATP-dependent RNA helicase DED1 OS=Kluyveromyces l... [more]
DED1_YEAST1.149e-3035.53ATP-dependent RNA helicase DED1 OS=Saccharomyces c... [more]
DED1_YEAS71.149e-3035.53ATP-dependent RNA helicase DED1 OS=Saccharomyces c... [more]
DDX43_HUMAN1.149e-3039.19Probable ATP-dependent RNA helicase DDX43 OS=Homo ... [more]
DBP3_SCLS11.149e-3034.63ATP-dependent RNA helicase dbp3 OS=Sclerotinia scl... [more]
DBP3_ASPTN1.149e-3033.63ATP-dependent RNA helicase dbp3 OS=Aspergillus ter... [more]
DBP2_SCLS11.149e-3036.00ATP-dependent RNA helicase dbp2 OS=Sclerotinia scl... [more]
DED1_USTMA1.501e-3036.68ATP-dependent RNA helicase DED1 OS=Ustilago maydis... [more]
DED1_DEBHA1.501e-3037.50ATP-dependent RNA helicase DED1 OS=Debaryomyces ha... [more]
DDX46_DANRE1.501e-3035.56Probable ATP-dependent RNA helicase DDX46 OS=Danio... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DE05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258881 ID=DY258881; Name=DY258881; organism=Citrus clementina; type=EST; length=671bp
GGAATCCTCTGTGCTTGGTGTTGGCTCCGACAAGAGAACTTGCGAAGCAA
GTTGAGAAGGAATTCCATGAATCTGCACCCAGCTTGGATACCATTTGTGT
TTACGGGGGCACTCCAATTTCTCATCAAATGAGGGCTCTTGACTATGGTG
TTGATGCGGTTGTTGGGACACCCGGTCGTGTTATTGATTTGATTAAGCGC
AATGCTCTCAACTTATCGGAGGTTCAGTTTGTTGTTCTTGATGAAGCTGA
TCAGATGCTTAGTGTTGGCTTTGCTGAAGATGTTGAAGTCATCTTGGAAA
GGTTGCCACAAAATCGACAGGGTATGATGTTTTCTGCGACGATGCCTCCA
TGGATTAGGAGCCTCACAAATAAGTACCTCAAGAATCCATTAACGGTTGA
CCTTGTTGGAGATTCTGATCAAAAGCTAGCTGATGGAATTCCCCTCTATT
CCATTGCAACAAGCATGTATGAAAAACCATCAATTATTGGTCAGCTTATA
ACAGAACATGCAAAAGGTGGAAAATGCATTGTTTTCACTCAAACAAAACG
TGATGCAGACCGCTTGGCTCATGCTATGGCTAAAAGTTATAATTGTGAGC
CTTTGCATGGGGATATCTCACAAAGCCAGAGGGAGAGGACCCTTTCAGCT
TTCCGAGATGGACGTTTCAAT
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