DY258881

Overview
NameDY258881
Unique NameDY258881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1278 contig Ccv1_Contig1278:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP2_USTMA (ATP-dependent RNA helicase DBP2 OS=Ustilago maydis GN=DBP2 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.887e-35
Identity = 84/224 (37.50%), Postives = 128/224 (57.14%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-PLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ L+LAPTRELA Q++ E +    S  L T  VYGG P   Q+R L  G +  + TPGR+ID++     NL  V ++V+DEAD+ML +GF   +  IL+++  +RQ +MFSAT P  ++ L   +L N   V+ +G ++      +  +  + T   +K  +IG L T  A+ GK I+FT TKR AD L   + +  +    +HGD  Q +R+  L+ F+ GR
Sbjct:  204 PIALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQIRDLQRGAEICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRPDRQTLMFSATWPKEVQRLAGDFLNNYAQVN-IGSTELAANHNVKQIIEVCTEFEKKGKLIGHLETISAENGKVIIFTSTKRVADDLTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGR 426          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: Y802_STAS1 (Probable DEAD-box ATP-dependent RNA helicase SSP0802 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.689e-35
Identity = 86/225 (38.22%), Postives = 139/225 (61.78%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            L+LAPTRELA QV +     A   ++  + V+GG PI  Q++AL  G   VVGTPGRVID + R  L  +++  ++LDEAD+M+++GF +D++ I++++P + RQ M+FSATMP  I++L  +++K+P+ V  + +  SD ++ +    Y+I   + EK       +  H +    IVF +TKR  D L  A+ +K Y  E LHGDI+Q++R   L  F++ + +
Sbjct:   73 LILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQTMLFSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEE---YYTIVKEL-EKFDTFTSFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLD 292          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH30_ORYSJ (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica GN=Os01g0911100 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.312e-34
Identity = 79/223 (35.43%), Postives = 133/223 (59.64%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ L+LAPTRELA Q+++E  +  S     + C+YGG P   Q+R L  GV+ V+ TPGR+ID+++    NL  V ++VLDEAD+ML +GF   +  I+ ++  +RQ + +SAT P  + SL  ++L+NP  V ++G  D K    I       S +EK   + +L+++   G + ++F QTK+D D++   +    +    +HGD +Q++R+  L+ F+ G+
Sbjct:  325 PIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVESLARQFLQNPYKV-IIGSPDLKANHSIQQIIEVISEHEKYPRLSKLLSDLMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGK 546          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: Y2316_STAA8 (Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02316 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34
Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            L+LAPTRELA QV ++  E +    +  + V+GG PI  Q++AL  G   VVGTPGRVID + R  L    +  ++LDEAD+M+++GF +D+  I++++P   RQ M+FSATMP  I++L  +++K+P  +  + +  SD ++ +    Y+I   + EK       +  H +    IVF +TKR  D L  A+ +K Y  E LHGDI+Q++R   L  F++ + N
Sbjct:   73 LILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIN 292          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: Y2168_STAAR (Probable DEAD-box ATP-dependent RNA helicase SAR2168 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34
Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            L+LAPTRELA QV ++  E +    +  + V+GG PI  Q++AL  G   VVGTPGRVID + R  L    +  ++LDEAD+M+++GF +D+  I++++P   RQ M+FSATMP  I++L  +++K+P  +  + +  SD ++ +    Y+I   + EK       +  H +    IVF +TKR  D L  A+ +K Y  E LHGDI+Q++R   L  F++ + N
Sbjct:   73 LILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIN 292          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: Y2081_STAAM (Probable DEAD-box ATP-dependent RNA helicase SAV2081 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2081 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34
Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            L+LAPTRELA QV ++  E +    +  + V+GG PI  Q++AL  G   VVGTPGRVID + R  L    +  ++LDEAD+M+++GF +D+  I++++P   RQ M+FSATMP  I++L  +++K+P  +  + +  SD ++ +    Y+I   + EK       +  H +    IVF +TKR  D L  A+ +K Y  E LHGDI+Q++R   L  F++ + N
Sbjct:   73 LILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIN 292          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: Y2072_STAAC (Probable DEAD-box ATP-dependent RNA helicase SACOL2072 OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34
Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            L+LAPTRELA QV ++  E +    +  + V+GG PI  Q++AL  G   VVGTPGRVID + R  L    +  ++LDEAD+M+++GF +D+  I++++P   RQ M+FSATMP  I++L  +++K+P  +  + +  SD ++ +    Y+I   + EK       +  H +    IVF +TKR  D L  A+ +K Y  E LHGDI+Q++R   L  F++ + N
Sbjct:   73 LILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIN 292          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: Y2037_STAA3 (Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2037 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34
Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            L+LAPTRELA QV ++  E +    +  + V+GG PI  Q++AL  G   VVGTPGRVID + R  L    +  ++LDEAD+M+++GF +D+  I++++P   RQ M+FSATMP  I++L  +++K+P  +  + +  SD ++ +    Y+I   + EK       +  H +    IVF +TKR  D L  A+ +K Y  E LHGDI+Q++R   L  F++ + N
Sbjct:   73 LILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIN 292          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: Y2004_STAAW (Probable DEAD-box ATP-dependent RNA helicase MW2004 OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34
Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            L+LAPTRELA QV ++  E +    +  + V+GG PI  Q++AL  G   VVGTPGRVID + R  L    +  ++LDEAD+M+++GF +D+  I++++P   RQ M+FSATMP  I++L  +++K+P  +  + +  SD ++ +    Y+I   + EK       +  H +    IVF +TKR  D L  A+ +K Y  E LHGDI+Q++R   L  F++ + N
Sbjct:   73 LILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIN 292          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: Y1985_STAAS (Probable DEAD-box ATP-dependent RNA helicase SAS1985 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34
Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            L+LAPTRELA QV ++  E +    +  + V+GG PI  Q++AL  G   VVGTPGRVID + R  L    +  ++LDEAD+M+++GF +D+  I++++P   RQ M+FSATMP  I++L  +++K+P  +  + +  SD ++ +    Y+I   + EK       +  H +    IVF +TKR  D L  A+ +K Y  E LHGDI+Q++R   L  F++ + N
Sbjct:   73 LILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIN 292          
The following BLAST results are available for this feature:
BLAST of DY258881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_USTMA5.887e-3537.50ATP-dependent RNA helicase DBP2 OS=Ustilago maydis... [more]
Y802_STAS17.689e-3538.22Probable DEAD-box ATP-dependent RNA helicase SSP08... [more]
RH30_ORYSJ1.312e-3435.43DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sa... [more]
Y2316_STAA81.713e-3438.22Probable DEAD-box ATP-dependent RNA helicase SAOUH... [more]
Y2168_STAAR1.713e-3438.22Probable DEAD-box ATP-dependent RNA helicase SAR21... [more]
Y2081_STAAM1.713e-3438.22Probable DEAD-box ATP-dependent RNA helicase SAV20... [more]
Y2072_STAAC1.713e-3438.22Probable DEAD-box ATP-dependent RNA helicase SACOL... [more]
Y2037_STAA31.713e-3438.22Probable DEAD-box ATP-dependent RNA helicase SAUSA... [more]
Y2004_STAAW1.713e-3438.22Probable DEAD-box ATP-dependent RNA helicase MW200... [more]
Y1985_STAAS1.713e-3438.22Probable DEAD-box ATP-dependent RNA helicase SAS19... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DE05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258881 ID=DY258881; Name=DY258881; organism=Citrus clementina; type=EST; length=671bp
GGAATCCTCTGTGCTTGGTGTTGGCTCCGACAAGAGAACTTGCGAAGCAA
GTTGAGAAGGAATTCCATGAATCTGCACCCAGCTTGGATACCATTTGTGT
TTACGGGGGCACTCCAATTTCTCATCAAATGAGGGCTCTTGACTATGGTG
TTGATGCGGTTGTTGGGACACCCGGTCGTGTTATTGATTTGATTAAGCGC
AATGCTCTCAACTTATCGGAGGTTCAGTTTGTTGTTCTTGATGAAGCTGA
TCAGATGCTTAGTGTTGGCTTTGCTGAAGATGTTGAAGTCATCTTGGAAA
GGTTGCCACAAAATCGACAGGGTATGATGTTTTCTGCGACGATGCCTCCA
TGGATTAGGAGCCTCACAAATAAGTACCTCAAGAATCCATTAACGGTTGA
CCTTGTTGGAGATTCTGATCAAAAGCTAGCTGATGGAATTCCCCTCTATT
CCATTGCAACAAGCATGTATGAAAAACCATCAATTATTGGTCAGCTTATA
ACAGAACATGCAAAAGGTGGAAAATGCATTGTTTTCACTCAAACAAAACG
TGATGCAGACCGCTTGGCTCATGCTATGGCTAAAAGTTATAATTGTGAGC
CTTTGCATGGGGATATCTCACAAAGCCAGAGGGAGAGGACCCTTTCAGCT
TTCCGAGATGGACGTTTCAAT
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